SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6018

Length: 1159 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6018

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2658	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SDZ8_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	probable methyltransferase pmt11-like	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Flavodoxin	IPR001094	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Domain of unknown function DUF21	IPR002550	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	tRNA wybutosine-synthesis	IPR013917	-	-
Sma3		IPR017909	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LME5

Fln msg: Distance to subject end: 18 aas, your sequence is longer than subject: 347 - 188

Fln protein: MSYGHQIQFALERGVPAMVAVFATHRLPYPSQAFDLIHCSQCHVNWTRDGGILLLEVNRMLRAGGYFAWGAQQDKQKENVQEALNDIKDLAIRICWKLVSEEGLVAIWQKPFNNNCYVSRHVGVEPPLCDVHDDPDDIWYVPLKTCISRLPENGSGGGWTKWPQRLYTPPDRLQGVDMEAYIAKDEVFTAEAGYWKMFVKSNLHRLGWKVHNVRNVMDMKANFGGFAAALIAEDADCWVMNVVPLSGPNTLPVIYDRGLIGVAHDWCEPFDTHPRTYDLLHASGLFSIEKRRCEIAYIILEMDRILRPGGHAYIQDSLTILVEIEGIAKSLGWRTFMFDTEEGTYGH

Protein Length: 348

Fln nts: AATGTTTAAGATTTGGTGTTCATGTTAGAGTTGCTCTGGATGTGTGTTGTGGTTTTGCTGGTTTTGGTACTTCATTACTTTCTCACGATGTATTAACTCTTTCAATTGGTCCGAAAG_-_ATGTCTTATGGACACCAGATCCAATTTGCTCTCGAACGTGGTGTTCCAGCTATGGTAGCAGTGTTTGCAACACATCGGCTCCCATATCCAAGTCAGGCTTTTGACCTGATTCATTGTTCACAGTGTCATGTTAACTGGACTCGTGATGGGGGTATTTTATTACTGGAGGTCAATAGGATGCTCAGGGCTGGAGGTTATTTTGCTTGGGGTGCACAACAGGATAAACAAAAAGAGAACGTGCAGGAAGCTTTGAATGATATCAAGGATCTTGCAATCCGTATCTGTTGGAAACTTGTGAGTGAAGAGGGCCTTGTTGCAATTTGGCAGAAACCTTTCAATAATAATTGTTATGTCAGCCGGCATGTTGGGGTTGAACCTCCGTTGTGTGATGTGCATGATGACCCTGATGATATATGGTATGTGCCATTGAAGACATGTATCTCACGATTACCTGAGAATGGCTCCGGAGGAGGTTGGACCAAATGGCCTCAACGCTTGTACACTCCTCCTGACCGATTGCAGGGTGTAGATATGGAAGCATACATAGCAAAGGATGAGGTGTTTACTGCAGAAGCAGGATATTGGAAAATGTTTGTGAAAAGCAATTTACATAGGCTTGGCTGGAAAGTACATAATGTTCGAAACGTTATGGATATGAAAGCAAATTTTGGAGGGTTTGCCGCTGCTCTAATAGCTGAAGATGCTGATTGTTGGGTAATGAATGTGGTTCCTCTAAGTGGACCAAATACATTGCCTGTGATTTATGACCGTGGTCTGATTGGAGTTGCTCATGATTGGTGTGAACCATTTGATACACATCCTCGGACCTATGATCTTCTTCATGCTTCTGGCCTGTTCTCTATTGAGAAGAGAAGATGTGAGATTGCATATATTATACTTGAGATGGACCGCATTTTACGTCCTGGTGGGCATGCTTATATTCAAGACTCCTTGACCATTCTTGTGGAAATTGAGGGAATTGCAAAGTCTCTCGGGTGGAGGACATTCATGTTTGACACTGAAGAGGGAACATATGGACATT

Fln Alignment:

Contig6018___MEAYIAKDEVFTAEAGYWKMFVKSNLHRLGWKVHNVRNVMDMKANFGGFAAALIAEDADCWVMNVVPLSGPNTLPVIYDRGLIGVAHDWCEPFDTHPRTYDLLHASGLFSIEKRRCEIAYIILEMDRILRPGGHAYIQDSLTILVEIEGIAKSLGWRTFMFDTEEGTYG
B8LME5_________________MDAYISKEEVFTAEAGYWKMFVKSNLHRLGWKLHNVRNVMDMKAKFGGFAAALIAEDADCWVMNVVPVSGPNTLPVIYDRGLIGVAHDWCEPFDTHPRTYDLLHASGLFSIEKRRCEIAYIILEMDRILRPGGHAYIQDSLSILVEIEAIAKSVGWRTIMFDTEEGTYG

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
118	40		60		1.0
179	16		83		0.994512
224	16	83			0.994512
226			83	16	0.994512
239	16	83			0.994512
240	83			16	0.994512
590		25	75		0.996473
591	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain