SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6013

Length: 1078 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6013 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20780	21/21

Source	Descriptions	Term	Type	Identity
AutoFact	[O] COG0464 ATPases of the AAA+ class	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	83%
Blast2go	Thiamine metabolism	00730	83%
Blast2go	Metabolic pathways	01100	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Thiamin pyrophosphokinase	IPR006282	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Thiamin pyrophosphokinase, catalytic domain	IPR007371	-	-
Sma3	Thiamin pyrophosphokinase, vitamin B1-binding domain	IPR007373	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	MutL, C-terminal, dimerisation	IPR014790	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE60

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 358 - 388

Fln protein: CHLDPNKEASKKAAERKKEIAKRFGRPRILTNPYEDVIACDVINPDEIDVTFDSIGGLDKVKQELYELVILPLQRPKLFGQCKLLSPPKGVLLYGPPGTGKTLLAKAIARESGAVFINVRVANLMSKWFGDSQKLVTAVFTLAQKLQPAIIFLDEVDSFLGQRRSTEQEAFTNMKTEFMALWDGFTTDQAARVTVLAATNRPEELDEAILRRLPRVFEVGMPSCIERAKILEVVLKGENVEDGIDYDHIASLCEGYSGSDLTDLCKQAAYFPIRELLAQEKSGQLTSEIPRPLKQSDLEKVLSIGKTSRVAAAEYGNRKQTDMQSRLGSSSEQSGVSLTDFVKLLSLMGSAQRTTAEN

Protein Length: 359

Fln nts: AATGTCATCTCGATCCTAATAAAGAAGCCTCAAAAAAGGCGGCCGAACGAAAGAAGGAAATCGCCAAACGTTTTGGTCGTCCTCGGATACTCACAAATCCTTACGAGGATGTGATAGCTTGTGATGTTATCAATCCAGATGAAATTGACGTAACCTTTGACTCAATTGGAGGGTTAGACAAGGTTAAACAGGAACTTTACGAGCTGGTTATTCTTCCATTACAGAGGCCTAAATTGTTTGGACAGTGTAAGCTCCTCAGCCCTCCAAAAGGTGTTTTGCTGTATGGTCCACCTGGAACTGGGAAAACGTTACTTGCAAAGGCAATAGCAAGAGAATCAGGGGCTGTTTTCATCAACGTAAGGGTAGCCAATCTAATGAGCAAATGGTTTGGGGATTCTCAGAAACTTGTGACTGCTGTGTTCACACTTGCACAGAAGCTTCAACCTGCTATCATATTTCTTGATGAGGTCGATAGTTTTTTGGGGCAGCGCCGTTCTACTGAGCAAGAAGCTTTCACAAATATGAAGACAGAGTTCATGGCTTTGTGGGATGGCTTTACAACAGATCAAGCTGCTCGGGTTACTGTTCTTGCGGCAACCAACAGGCCTGAAGAGTTAGATGAAGCTATACTACGACGTCTTCCTAGGGTATTTGAAGTTGGGATGCCTAGCTGTATAGAGAGAGCCAAAATTTTAGAAGTGGTTTTGAAGGGTGAAAATGTGGAGGATGGTATTGACTATGATCACATTGCAAGTTTATGTGAAGGGTATAGTGGCTCTGACTTAACAGATCTATGTAAGCAGGCAGCTTATTTTCCAATTAGAGAATTGCTGGCACAGGAAAAGAGTGGCCAGCTAACTTCTGAGATACCAAGACCCTTAAAGCAGTCCGATTTGGAAAAGGTACTCTCTATTGGAAAAACATCCAGGGTCGCAGCCGCAGAGTATGGTAATAGGAAGCAAACGGATATGCAATCCAGATTAGGATCATCAAGTGAGCAGTCGGGAGTCAGTTTAACTGATTTTGTCAAGTTGCTTTCCCTGATGGGCAGTGCACAGCGAACGACTGCAGAAAATTG

Fln Alignment:

Contig6013___HLDPNXXXXXXXXXXXXXXXKRFGRPRILTNPYEDVIACDVINPDEIDVTFDSIGGLDKVKQELYELVILPLQRPKLFGQCKLLSPPKGVLLYGPPGTGKTLLAKAIARESGAVFINVRVANLMSKWFGDSQKLVTAVFTLAQKLQPAIIFLDEVDSFLGQRRSTEQEAFTNMKTEFMALWDGFTTDQAARVTVLAATNRPEELDEAILRRLPRVFEVGMPSCIERAKILEVVLKGENVEDGIDYDHIASLCEGYSGSDLTDLCKQAAYFPIRELLAQEKSGQLTSEIPRPLKQSDLEKVLSIGKTSRVAAAEYGNRKQTDMQSRLGSSSEQSGVSLTDFVKLLSLMGSAQRTTAEN
D5AE60_________________HLDPNKEATKKAAERKKEISKRFGRPRVLTNPYEDVIACDVINPDDIDVTFDSIGGLEKVKQELYELVILPLQRPNLFGHCKLLSPPKGVLLYGPPGTGKTLLAKAIARESGAVFINVRVANLMSKWFGDSQKLVTAVFTLAQKLQPAIIFLDEVDSFLGQRRSSEQEAFTNMKTEFMALWDGFTTDQTARVTVLAATNRPEELDEAILRRLPRVFEVGMPSCIQRAKILEVILKGENVEDDIDYDYIASLCEGYSGSDLTDLCKQAAYFPIRELLEQEKSGQLTSETPRPLKQSDLEKVLSIGKTSRVAAAEYGNRKQTDMQSRLGSSSEQLGVSLTDFVKFLSLMGSAQRTTPEN

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
278		75		25	0.996473
396			66	33	0.997452
435	16	83			0.994512
438	83			16	0.994512
546	25		75		0.996473
547	75	25			0.996473
549		75		25	0.996473
554	33			66	0.997452
639	33		66		0.997452
666		66		33	0.997452
667	66		33		0.997452
668		66		33	0.997452
835		80		20	0.995493
836			20	80	0.995493
922	12			87	0.992554
923		12	87		0.992554
925			87	12	0.992554
929	85			14	0.993533
930	85			14	0.993533
999		20		80	0.995493
1000	20	80			0.995493
1001		80		20	0.995493
1002			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain