SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6005

Length: 1311 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6005

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9904	29/29

Source	Descriptions	Term	Type	Identity
AutoFact	translation initiation factor nCBP [Triticum aestivum]	-	-	81%
FL-Next	sp=Eukaryotic translation initiation factor 4E type 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	cap-binding protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	88%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	88%
Blast2go	cytoplasm	GO:0005737	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation Initiation factor eIF- 4e	IPR001040	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FK59

Fln msg: Separated hits, possible frame ERROR between 582 and 584,

Fln protein: MRNDQQGKDDRARREREAEERERQSRELKAGLHPLQNRFVFWYLRRQPGVRSQASYEENMKKIVEFSTVEGFWVCYCHFARVSSMPNPTNLHLFKEGLRPLWEDPGNRNGGKWIIRLNKAVSGRFWEDLVLALVGDQLDYGDDVCGIVLSVRFGEDILSVWNRNASDGQAVMVLRDSIxxKHLHLPASYLMEYKPHDAALRDNSSYRNTWLRG*

Protein Length: 215

Fln nts: AATGTGAATTGATACCGAACGACCGCCCGCCGTTGTTGCCCCTCA_-_ATGCGAAATGATCAACAAGGAAAAGACGACAGAGCACGACGCGAGAGAGAAGCAGAAGAAAGGGAACGCCAAAGCAGAGAGCTCAAAGCCGGACTCCATCCTTTACAGAATCGATTTGTTTTCTGGTACCTTCGTCGACAACCTGGAGTTAGATCACAAGCATCATATGAGGAAAACATGAAAAAAATTGTGGAGTTCAGCACTGTGGAAGGCTTTTGGGTTTGCTATTGCCATTTTGCTCGGGTTTCTTCTATGCCAAACCCAACAAATTTGCACCTTTTCAAAGAGGGTCTTCGACCCTTATGGGAGGACCCAGGAAATCGTAATGGTGGGAAGTGGATAATTCGGCTGAATAAGGCTGTCTCAGGCAGGTTTTGGGAAGACTTGGTACTAGCGCTGGTAGGCGATCAGCTGGATTATGGTGATGATGTATGTGGTATTGTATTGAGTGTTCGCTTTGGGGAGGACATTCTCAGTGTTTGGAATAGAAATGCTTCTGATGGCCAGGCAGTAATGGTATTGAGAGATTCAATCAAxxxTAAACATCTTCACCTTCCTGCCAGCTACCTGATGGAGTACAAGCCACACGATGCAGCATTACGAGATAATTCGTCATACAGAAACACTTGGTTGAGGGGATGA___TTGAGGTGTTCAGCATGCTGTTAAATTATTGACGTTCTGTATCATCAGTACTCTAGTCATTTCAGTTTTTCAGAAGTGTAGGGGAGTGTTCAAGTTCTCCTCAAATCTGTATCATGTTGATGTATAATCTTGCAGAGCAGCATGTGTTTCTTTGGGTCACATCAATCGTATTCATCATTGCATACTGCCAAACGCTGGATCACAATCTGAAATTTTCATGTCTCATTTTCCTAACCATTTAGTTTCTAATTGCTGGTCCATGTGGCACTAAAGCTTTAGTCATGAAAGCAACTTATGATCCAGAGGTACAAAGTTCAAACATGGTAGTATTTTCCTGGAAGATACATTGACTATTACTGGTAAGGCGAGCTACATAGAGATCATGGGCAGTGATAGGCACAGAGGTCTTTCAAAATTTGAATGAAAACTAACTAGATTTTCAACTACATACTCTGCAGACATTAAACTCGGTTGTATTTTGAAATTGAACTTCTTAATTGTTTAGATAATTCGGAGAATATCTTAACAAAGAATGCAGTATTTGTGTCACAAAGGTGGCTTAATGCAATTTGAGACCGAACCTTCAGAAACACTGAAATCACATGTTTTGCAATTTCATTCTTGCA

Fln Alignment:

Contig6005___QSRELKAGLHPLQNRFVFWYLRRQPGVRSQASYEENMKKIVEFSTVEGFWVCYCHFARVSSMPNPTNLHLFKEGLRPLWEDPGNRNGGKWIIRLNKAVSGRFWEDLVLALVGDQLDYGDDVCGIVLSVRFGEDILSVWNRNASDGQAVMVLRDSIKxKHLHLPASYLMEYKPHDAALRDNSSYRNTWLRG
Q9FK59_________________RSRELKDGDHPLRYKFSIWYTRRTPGVRNQ-SYEDNIKKMVEFSTVEGFWACYCHLARSSLLPSPTDLHFFKDGIRPLWEDGANCNGGKWIIRFSKVVSARFWEDLLLALVGDQLDDADNICGAVLSVRFNEDIISVWNRNASDHQAVMGLRDSIKxRHLKLPHAYVMEYKPHDASLRDNSSYRNTWLRG

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
347	12	50		37	1.0
422			14	85	0.993533
472	14		85		0.993533
476			87	12	0.992554
477	85			14	0.993533
486	16		83		0.994512
487		16		83	0.994512
656	83		16		0.994512
705	14	85			0.993533
708	12		87		0.992554
709	12	87			0.992554
761		10		90	0.90298
762		90		10	0.90298
783	70		30		1.0
788	10	90			0.90298
789		10		90	0.90298
790	10	90			0.90298
791		90		10	0.90298
812		11		88	0.923564
813	11		88		0.923564
817	90		10		0.90298
856	90			10	0.90298
866	11			88	0.923564
1227			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain