SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5994

Length: 843 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5994

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6868	10/11
SustainPine v2.0	sp_v2.0_unigene30581	1/11

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NAC domain containing protein 28 [Arabidopsis thaliana] gb\|AAF06052.1\|AC009513_8 Contains similarity to gb\|AF123310 NAC domain protein NAM gene from Arabidopsis thaliana gb\|AEE34440.1\| NAC domain containing protein 28 [Arabidopsis thaliana]	-	-	8.99999e-40	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Blast2go	nac domain ipr003441	-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	multicellular organismal development	GO:0007275	Biological Process	68%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	68%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	68%
Blast2go	DNA binding	GO:0003677	Molecular Function	68%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M20	IPR002933	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Cytochrome c oxidase biogenesis protein Cmc1-like	IPR013892	-	-
Sma3	Alcohol dehydrogenase, iron-type, conserved site	IPR018211	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLW8

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 281 - 782

Fln protein: GNKSLCIITRIPKICEQFPTASAFHSGHTVIPLRYHSGNLVGCARKLSNGRIR*THANIYYI*TYGLFLNSQSSEIVDIPAEPPNQTMKIEPGNSLEIWKSQQQVLTSLTEDKMPISKINCQTSLSEDGQLSAVAVIKKHEFVPSEDDSETPVQFREPIKGSSSGEVPDSSGASYKVVHPEKILPAPSSSEPTSVRGWKISERILKFCSSIPSYAAPVMEYLGRFNPKKAILPSEFACNFGPTDGATDSAGNMGTCMCTEGNIERARSNIFLSQLKQRVKP

Protein Length: 282

Fln nts: GGCAATAAATCCCTCTGCATTATAACCCGAATCCCAAAAATCTGTGAGCAATTTCCCACGGCTTCGGCTTTTCACAGCGGACATACCGTCATCCCTCTTCGTTACCACTCTGGGAATCTCGTGGGCTGTGCAAGGAAACTGTCTAATGGTCGAATTCGATGAACTCACGCTAACATATACTATATATAGACATATGGGCTTTTCCTGAATAGCCAGTCTTCAGAGATAGTTGATATTCCTGCTGAGCCCCCTAACCAAACTATGAAAATTGAACCGGGCAATAGTCTGGAGATATGGAAGTCTCAGCAACAGGTGTTGACATCGCTCACTGAAGATAAAATGCCCATTTCTAAAATAAATTGCCAGACTTCTTTGTCAGAGGATGGTCAGCTCTCAGCTGTAGCTGTTATTAAAAAACATGAGTTTGTACCATCTGAAGATGATTCAGAGACACCAGTTCAGTTTCGTGAACCAATTAAGGGTTCATCATCTGGAGAAGTACCAGATAGTTCAGGAGCTTCATATAAAGTGGTTCATCCAGAGAAAATTTTACCAGCCCCAAGCTCATCGGAACCGACATCTGTCAGAGGCTGGAAAATTTCAGAACGAATCTTAAAATTCTGCAGTTCTATTCCTTCATATGCAGCTCCAGTGATGGAATATTTAGGTCGATTTAATCCCAAGAAAGCTATTCTTCCTTCAGAATTTGCATGTAATTTTGGTCCAACAGATGGTGCGACTGATAGTGCTGGTAATATGGGAACCTGCATGTGCACTGAAGGAAATATAGAGCGTGCCAGATCTAACATTTTCTTGTCTCAGTTGAAACAGAGAGTGAAGCCT

Fln Alignment:

Contig5994___YI*TYGLFLNSQSSEIVDIPAEPPNQTMKIEPGNSLEIWKSQQQVLTSLTE-----------DKMPISKINCQTS----LSEDGQLSAVAVIKKHEFVPSEDDSETPVQFREPIKGSSSGEVPDSSGASYKVVHPEKILPAPSSSEPTSVRGW-----KISERILKFCSSIPSYAAPVMEYLGRFNPKKAILPSEFACNFG-----PTDGATDSAGNMGTC
B8LLW8_________________YSSSYGLFIKKESSEIIELPTNIFQTTVK-DKTNCVNDFQSLSLDLTPSSSPGNSSPAMSMRNKISNPKTNDQTSSERYLLDSNKPSITEHVQKSENSASKNAIGILTQAACLGKDSPPEKVLHNSGTSLE--HGPQMKELELNSSETMVVGLHNEDPKPSKILSKFLSCIPASPGSAMECNANLNPAKVILDSNVGTNSGLVCVATTNGHVSATSLISTC

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
502	20	80			0.995493
505			80	20	0.995493
506	80			20	0.995493
530	25			75	0.996473
531		25	75		0.996473
532	25		75		0.996473
625	40		60		1.0
628			60	40	1.0
691	25	75			0.996473
692		25		75	0.996473
790	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain