SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5972

Length: 1360 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5972

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18507	27/27

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	4.06377e-44	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	wd repeat domain phosphoinositide-interacting protein	-	-	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	0.0	-
Sma3	WD40 repeat	IPR001680	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRE8

Fln msg: Overlapping hits, possible frame ERROR between 610 and 609, atg_distance in limit (1-15): atg_distance = 2,

Fln protein: MLDPSPDPNPNSPSSTETASEKSSLLYVSFK*DFGCFACGTEQGFQVYNCDPFRETFRRDFNNGGIGVVEMLFRCNILALVGGGSNPQYPPNKVMIWDDHQSRCIGELSFRSEVRAVKLRRDRIVVVLEHKIYVYNFVDLKLLHQIETMANPKGLCAVSHAPNSFVLACPGLHRGQMRVEHYGLKRTxxFITAHDSRIACFALTLDGSLLATASTKGTLIRIFNTLDATRLQEVRRGADRAEIYSLAFSSSHQWLAVSSDKGTIHIFGLNVPRSGEDPRSVDATQSLTGTNNGSGGNLVIPSLGANPGSSLSFMRGVLPRYFSSQWSFAQFHLPEGLQFLVAFGHQKNTIVIVGLDGSFYRCAFDPVNGGEMVQKEYARFLKSDESSDN*

Protein Length: 391

Fln nts: GGCGACGGCAACGACTGTTTCACCGCCAAGCAGTACCACTTCCCCT_-_ATGCTTGACCCATCTCCCGATCCAAATCCCAATTCGCCGTCTTCAACAGAGACTGCCAGTGAAAAATCCTCATTGCTCTACGTATCATTCAAGTAGGACTTCGGTTGCTTTGCCTGTGGCACTGAGCAAGGTTTCCAGGTCTATAACTGCGATCCGTTCAGAGAAACCTTTAGAAGAGACTTCAACAATGGTGGTATTGGGGTTGTGGAGATGTTATTCCGATGTAATATTTTGGCCCTCGTGGGCGGGGGTTCGAATCCCCAGTACCCTCCCAATAAGGTCATGATCTGGGATGATCATCAGAGCCGCTGTATTGGGGAATTATCGTTCAGGTCTGAGGTTCGAGCCGTGAAGCTGAGACGGGATCGGATTGTGGTGGTGTTGGAGCACAAGATTTATGTGTACAATTTCGTGGATTTGAAGCTATTGCATCAGATTGAGACGATGGCAAACCCTAAGGGCTTGTGTGCTGTTTCTCATGCTCCCAATAGCTTCGTGTTGGCCTGCCCAGGCTTGCACCGTGGGCAGATGAGAGTCGAGCACTATGGCCTCAAGAGGACCxxxxxxTTTATAACTGCCCATGATTCTCGCATCGCCTGCTTTGCGCTCACCCTCGATGGCAGCCTCCTTGCTACTGCTAGTACAAAGGGGACCCTTATAAGGATCTTCAACACCCTAGACGCCACTCGATTGCAAGAGGTTCGTAGAGGTGCTGATAGAGCAGAAATCTATAGTCTGGCCTTCTCTTCCAGTCATCAATGGCTGGCAGTTTCAAGCGACAAGGGAACAATTCACATTTTTGGCCTCAATGTACCAAGGTCAGGAGAAGATCCAAGGAGTGTTGATGCCACACAAAGTCTCACAGGGACAAATAATGGTTCTGGTGGTAATCTGGTCATTCCCTCACTGGGAGCTAATCCTGGCTCGTCACTTTCTTTTATGAGAGGAGTCCTGCCAAGATATTTTAGCTCTCAGTGGTCCTTCGCTCAGTTTCACTTGCCTGAGGGATTGCAATTTCTTGTAGCTTTTGGTCATCAAAAGAACACTATTGTCATTGTTGGCCTAGATGGAAGCTTCTATAGATGTGCGTTTGATCCTGTAAACGGTGGTGAAATGGTGCAAAAGGAGTATGCTAGATTTCTGAAATCAGATGAATCTAGTGACAACTGA___TGTTTGTTTATTTAATCCTGTAAGTGGTGGTGAAATGTTGCAAAATAACTATGTGAGATTTTCTGATATCAGATGTATCTAGTGACAACTGATGTTTGTTTGTTGGGGATTTTCAGCTGCATTTAATTGGATTTTAGTTGTACATT

Fln Alignment:

Contig5972___ETASEKSSLLYVSFK*DFGCFACGTEQGFQVYNCDPFRETFRRDFNNGGIGVVEMLFRCNILALVGGGSNPQYPPNKVMIWDDHQSRCIGELSFRSEVRAVKLRRDRIVVVLEHKIYVYNFVDLKLLHQIETMANPKGLCAVSHAPNSFVLACPGLHRGQMRVEHYGLKRTxFITAHDSRIACFALTLDGSLLATASTKGTLIRIFNTLDATRLQEVRRGADRAEIYSLAFSSSHQWLAVSSDKGTIHIFGLNVPRSGEDPRSVDATQXXXXXXXXXXXXXVIPSLGANPGSSLSFMRGVLPRYFSSQWSFAQFHLPEGLQFLVAFGHQKNTIVIVGLDGSFYRCAFDPVNGGEMVQKEYARFLKSDESSDN
B8LRE8_________________ETANEKSSLLYVSFNQDFGCFACGTEQGFQVYNCDPFRETFRRDFNNGGIGVVEMLFRCNILALVGGGSNPQYPPNKVMIWDDHQSRCIGELSFRSEVRAVKLRRDRIVVVLEHKIYVYNFVDLKLLHQIETMANPKGLCCVSHAPNSFVLACPGLHRGQMRVEHYGLKRTxFITAHDSRIACFALTLDGSLLATSSTKGTLIRIFNTLDATRLQEVRRGADRAEIYSLAFSSNHQWLAVSSDKGTIHIFGLNVPRTGEDSRSVDATQ-SLPGTNGSGGNLVIPSPGGNPGSSLSFMRGVLPRYFSSQWSFAQFHLPEGLQFLVAFGHQKNTIVIVGLDGSFYRCAFDPVNGGEMEQKEYARFLKSDESSDS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1000	10			90	0.90298
1002	10	90			0.90298
1004			90	10	0.90298
1140	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain