SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5895

Length: 2386 nt

UniGene Fasta

>biog3_v1.0_unigene5895
TGCATGCAAGAGGTTCGTGATGCAACACAGGCCTACATATATAGCAGATGATGATCCCAACAAGGATGTCAATATTGCATTCTACAATATTCCTACTTTGAGAAGGCTAAGAGATTTAACCACTGCTGAAATTGGGAAACTGGTATCTGTAAGTGGGGTCGTGACTCGAACTAGTGAGGTTCGTCCAGAGCTTTTACAGGGAACTTTCAAGTGCTTGGATTGTGGAGGAGTGATAAAAAATGTGGAGCAGCAATTTAAATACACACAGCCCATTATTTGTGTGAATGCTACTTGTTCAAATCGAGATAGATGGGCTCTTCTTCGTCAAGAGAGTAAGTTTGCAGATTGGCAGAGAGTTCGAATGCAAGAGACATCCAAAGAGATACCTGCTGGTTCTCTTCCACGGTCTTTAGATGTCATTCTCCGACATGAGATTGTTGAGCAGGCAAGGGCTGGTGACAAGGTGATATTCACAGGCACGGTTGTTGTCATACCAGACATATCAGCCTTATCCTCACCTGGTGACAGAGCAGAATCTCGCAGAGAAGGTCCTCAAAACCGAAGTGCATCCAGTGGTTATGAAGGAGTGCGTGGGCTTAAATCTCTTGGTGTACGAGATCTCTCGTATCGTCTGGCATTTATTGCCAATTCAGTGCAGCTTCATGACAAGAAAAGAGGTATTGATTTTAGAGGAGTAAAGAAGGATGGCGAGGAAGATGATACACCCCATTTTACGATGGAAGAAATAGATGAGATCCAAAGAATGAGAGGCACCATGGATTTCTTTAATAAATTGGTTGAAAGTATTGCACCAACTGTATTTGGTCATCAAGAGGTCAAGCGAGCAGTGTTGCTTATGCTTCTGGGTGGAGTTCATAAACAGACTCATGAGGGAATCAATTTAAGAGGGGACATTAACGTCTGCATCGTTGGAGATCCAAGTTGCGCCAAGTCACAATTCTTGAAGTATGCATCAAGCATTGTATCTAGGGCTGTCTATACCTCTGGAAAATCTTCTTCTGCTGCAGGCTTAACAGCAACTGTTGTAAAGGAGCCAGAGACTGGAGAATTCTGCATTGAGGCTGGAGCTTTGATGCTGGCTGACAATGGAATATGCTGTATAGATGAATTCGATAAAATGGATGTAAAAGATCAGGTTGCAATTCATGAGGCTATGGAGCAACAGACAATAAGCATTACAAAAGCTGGCATTCAAGCAACTCTAAATGCCCGTACCTCTATATTAGCAGCTGCAAATCCTACTGGTGGGCGTTATGATAAATCAAAGCCACTAAAGTACAATGTAGCACTTCCTCCTGCGATTCTTTCCAGGTTTGACCTGGTTTATGTCATGATAGATGAGCCAGATGATCAGACGGATCACCATATTGCAGATCATATTGTTAGAGTTCACCAAAAGCATGAAGAGGCACTGTCTCCATCTTTTACTACTGCTCAAATTCAGCGATACATTGCTTATGCAAAGACCCTTAAGCCAAAGCTAGGTACTGAAGCCAGAAAGGTCCTAGTTGATGCTTATGTATCCTTGCGGCGAGGTGATGCTGCACCTGGTAGTCGAGTTGCATACAGAATTACAGTGAGGCAATTGGAAGCTTTGATAAGATTGTCTGAGGCCATTGCTCGAGTGCACTTGGATTCTGAGGTGCGGCCAGCCCATGTTCATATGGCAGGGAGACTAATTAGCACATCCATTATCAGTGTTGACTCAAATGAGATTGATCTGGCTGATTTCGAAGATGCGGAGAATAACAATAATGATAGAGGTGCTGGGTACAATGAGAACCAACCAGCAGAAGCAGAAGGCCATCAACCTTCAGGCAATGGTACAACAGCAGCAGAAGGAAAAGCTGGTGATCAACCAAAGAAGAAAATGACAGTTACATATGAGCATTTCCAAAAAGTTACTCGTGCCCTTGTCATGCGGCTTAGACAACATGAAGAATCACTTAAAGATGAGGCTGGTTTAGCTGGTTTGAAACAGGCAGATCTAATCAAGTGGTACGTCGAAGATTTGAACTCCCAGCAGGTTTTTGATACAATGAGTGGATTACTGGAAGAAGTAAAAATTGTGAGGTCGATCATACAGCATTTGATAGACAGGGAAGGTGTTCTTGTGGTTCTTGATGACAGCCCACAAGCACCAGCACCTGGGACAGAAGGATTAGCCCAGTCCATTAGGAATGATCAGAGGGTTTTAGCAGTTAATCCCAACTATGTCTTAGAGTAGGAACTTTATATCAAACATGGCAAAATTTCTATTGAATCAACCCATATTAAGCATAGGCCATTATGATCTAATGCAGTTTAATTATATTCTGCATTTCTGGTTGCCAGTGAAAAGGAAGCAGTTGACATATGGAAACGA

Ace file of the UniGene biog3_v1.0_unigene5895

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2924	75/77

Source	Descriptions	Term	Type	Identity
AutoFact	[L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family	-	-	44%
FL-Next	sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress).	-	-	36%
Blast2go	minichromosome maintenance protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	DNA unwinding involved in replication	GO:0006268	Biological Process	78%
Blast2go	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	78%
Blast2go	DNA-dependent ATPase activity	GO:0008094	Molecular Function	78%
Blast2go	DNA binding	GO:0003677	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Mini-chromosome maintenance, DNA-dependent ATPase	IPR001208	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Mini-chromosome maintenance complex protein 2	IPR008045	-	-
Sma3	Mini-chromosome maintenance complex protein 4	IPR008047	-	-
Sma3	Mini-chromosome maintenance complex protein 6	IPR008049	-	-
Sma3	Mini-chromosome maintenance complex protein 7	IPR008050	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Mini-chromosome maintenance, conserved site	IPR018525	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P43299

Fln msg: your sequence is longer than subject: 749 - 716

Fln protein: ACKRFVMQHRPTYIADDDPNKDVNIAFYNIPTLRRLRDLTTAEIGKLVSVSGVVTRTSEVRPELLQGTFKCLDCGGVIKNVEQQFKYTQPIICVNATCSNRDRWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDKVIFTGTVVVIPDISALSSPGDRAESRREGPQNRSASSGYEGVRGLKSLGVRDLSYRLAFIANSVQLHDKKRGIDFRGVKKDGEEDDTPHFTMEEIDEIQRMRGTMDFFNKLVESIAPTVFGHQEVKRAVLLMLLGGVHKQTHEGINLRGDINVCIVGDPSCAKSQFLKYASSIVSRAVYTSGKSSSAAGLTATVVKEPETGEFCIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDEPDDQTDHHIADHIVRVHQKHEEALSPSFTTAQIQRYIAYAKTLKPKLGTEARKVLVDAYVSLRRGDAAPGSRVAYRITVRQLEALIRLSEAIARVHLDSEVRPAHVHMAGRLISTSIISVDSNEIDLADFEDAENNNNDRGAGYNENQPAEAEGHQPSGNGTTAAEGKAGDQPKKKMTVTYEHFQKVTRALVMRLRQHEESLKDEAGLAGLKQADLIKWYVEDLNSQQVFDTMSGLLEEVKIVRSIIQHLIDREGVLVVLDDSPQAPAPGTEGLAQSIRNDQRVLAVNPNYVLE*

Protein Length: 750

Fln nts: TGCATGCAAGAGGTTCGTGATGCAACACAGGCCTACATATATAGCAGATGATGATCCCAACAAGGATGTCAATATTGCATTCTACAATATTCCTACTTTGAGAAGGCTAAGAGATTTAACCACTGCTGAAATTGGGAAACTGGTATCTGTAAGTGGGGTCGTGACTCGAACTAGTGAGGTTCGTCCAGAGCTTTTACAGGGAACTTTCAAGTGCTTGGATTGTGGAGGAGTGATAAAAAATGTGGAGCAGCAATTTAAATACACACAGCCCATTATTTGTGTGAATGCTACTTGTTCAAATCGAGATAGATGGGCTCTTCTTCGTCAAGAGAGTAAGTTTGCAGATTGGCAGAGAGTTCGAATGCAAGAGACATCCAAAGAGATACCTGCTGGTTCTCTTCCACGGTCTTTAGATGTCATTCTCCGACATGAGATTGTTGAGCAGGCAAGGGCTGGTGACAAGGTGATATTCACAGGCACGGTTGTTGTCATACCAGACATATCAGCCTTATCCTCACCTGGTGACAGAGCAGAATCTCGCAGAGAAGGTCCTCAAAACCGAAGTGCATCCAGTGGTTATGAAGGAGTGCGTGGGCTTAAATCTCTTGGTGTACGAGATCTCTCGTATCGTCTGGCATTTATTGCCAATTCAGTGCAGCTTCATGACAAGAAAAGAGGTATTGATTTTAGAGGAGTAAAGAAGGATGGCGAGGAAGATGATACACCCCATTTTACGATGGAAGAAATAGATGAGATCCAAAGAATGAGAGGCACCATGGATTTCTTTAATAAATTGGTTGAAAGTATTGCACCAACTGTATTTGGTCATCAAGAGGTCAAGCGAGCAGTGTTGCTTATGCTTCTGGGTGGAGTTCATAAACAGACTCATGAGGGAATCAATTTAAGAGGGGACATTAACGTCTGCATCGTTGGAGATCCAAGTTGCGCCAAGTCACAATTCTTGAAGTATGCATCAAGCATTGTATCTAGGGCTGTCTATACCTCTGGAAAATCTTCTTCTGCTGCAGGCTTAACAGCAACTGTTGTAAAGGAGCCAGAGACTGGAGAATTCTGCATTGAGGCTGGAGCTTTGATGCTGGCTGACAATGGAATATGCTGTATAGATGAATTCGATAAAATGGATGTAAAAGATCAGGTTGCAATTCATGAGGCTATGGAGCAACAGACAATAAGCATTACAAAAGCTGGCATTCAAGCAACTCTAAATGCCCGTACCTCTATATTAGCAGCTGCAAATCCTACTGGTGGGCGTTATGATAAATCAAAGCCACTAAAGTACAATGTAGCACTTCCTCCTGCGATTCTTTCCAGGTTTGACCTGGTTTATGTCATGATAGATGAGCCAGATGATCAGACGGATCACCATATTGCAGATCATATTGTTAGAGTTCACCAAAAGCATGAAGAGGCACTGTCTCCATCTTTTACTACTGCTCAAATTCAGCGATACATTGCTTATGCAAAGACCCTTAAGCCAAAGCTAGGTACTGAAGCCAGAAAGGTCCTAGTTGATGCTTATGTATCCTTGCGGCGAGGTGATGCTGCACCTGGTAGTCGAGTTGCATACAGAATTACAGTGAGGCAATTGGAAGCTTTGATAAGATTGTCTGAGGCCATTGCTCGAGTGCACTTGGATTCTGAGGTGCGGCCAGCCCATGTTCATATGGCAGGGAGACTAATTAGCACATCCATTATCAGTGTTGACTCAAATGAGATTGATCTGGCTGATTTCGAAGATGCGGAGAATAACAATAATGATAGAGGTGCTGGGTACAATGAGAACCAACCAGCAGAAGCAGAAGGCCATCAACCTTCAGGCAATGGTACAACAGCAGCAGAAGGAAAAGCTGGTGATCAACCAAAGAAGAAAATGACAGTTACATATGAGCATTTCCAAAAAGTTACTCGTGCCCTTGTCATGCGGCTTAGACAACATGAAGAATCACTTAAAGATGAGGCTGGTTTAGCTGGTTTGAAACAGGCAGATCTAATCAAGTGGTACGTCGAAGATTTGAACTCCCAGCAGGTTTTTGATACAATGAGTGGATTACTGGAAGAAGTAAAAATTGTGAGGTCGATCATACAGCATTTGATAGACAGGGAAGGTGTTCTTGTGGTTCTTGATGACAGCCCACAAGCACCAGCACCTGGGACAGAAGGATTAGCCCAGTCCATTAGGAATGATCAGAGGGTTTTAGCAGTTAATCCCAACTATGTCTTAGAGTAG___GAACTTTATATCAAACATGGCAAAATTTCTATTGAATCAACCCATATTAAGCATAGGCCATTATGATCTAATGCAGTTTAATTATATTCTGCATTTCTGGTTGCCAGTGAAAAGGAAGCAGTTGACATATGGAAACGA

Fln Alignment:

Contig5895___LRDLTTAEIGKLVSVSGVVTRTSEVRPELLQGTFKCLDCGGVIKNVEQQFKYTQPIICVNATC---SNRDRWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDKVIFTGTVVVIPDISALSSPGDRAESRREGPQNRSASSGYEGVRGLKSLGVRDLSYRLAFIANSVQLHDKKRGIDFRGVKKDGEEDDTPHFTMEEIDEIQRMRGTMDFFNKLVESIAPTVFGHQEVKRAVLLMLLGGVHKQTHEGINLRGDINVCIVGDPSCAKSQFLKYASSIVSRAVYTSGKSSSAAGLTATVVKEPETGEFCIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDEPDDQTDHHIADHIVRVHQKHE------EALSPSFTTAQIQRYIAYAKTLKPKLGTEARKVLVDAYVSLRRGDAAPGSRVAYRITVRQLEALIRLSEAIARVHLDSEVRPAHVHMAGRLISTSIISVDSNE
P43299_________________IREVKASHIGQLVRISGIVTRCSDVKPLMAVAVYTCEDCGHEIYQEVTSRVFMPLFKCPSSRCRLNSKAGNPILQLRASKFLKFQEAKMQELAEHVPKGHIPRSMTVHLRGELTRKVSPGDVVEFSGIFLPIP---------------------------YTGFKALRAGLVAD-----TYLEATSVTHFKKKYEEY-------------EFQKDEEEQIARLAEDGDIYNKLSRSLAPEIYGHEDIKKALLLLLVGAPHRQLKDGMKIRGDVHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVMRDQVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLELAKHVLHVHQTEESPALGFEPLEPNI----LRAYISAARRLSPYVPAELEEYIATAYSSIRQEEAKSNTPHSY-TTVRTLLSILRISAALARLRFSESVAQSDVDEALRLMQMSKISLYADD

SNPs (tot: 94)

Position	A %	C %	G %	T %	Probability
249	33		66		0.997452
250		66		33	0.997452
251	66		33		0.997452
252			66	33	0.997452
307			75	25	0.996473
318			25	75	0.996473
404	40	60			1.0
406		60		40	1.0
408			60	40	1.0
590	40		60		1.0
697	20		80		0.995493
698	80		20		0.995493
732		75		25	0.996473
754	20		80		0.995493
759	20		80		0.995493
797	80	20			0.995493
826	20			80	0.995493
912	83		16		0.994512
927		66	33		1.0
1027			87	12	0.992554
1043	16	83			0.994512
1044	83	16			0.994512
1046		83		16	0.994512
1121	75			25	0.996473
1124	50			50	1.0
1125			50	50	1.0
1126			20	80	0.995493
1174		33		66	0.997452
1256	33		66		0.997452
1257	33	66			0.997452
1260		66		33	0.997452
1298	66		33		0.997452
1323	25	75			0.996473
1324	25	75			0.996473
1327		75		25	0.996473
1372	20	80			0.995493
1374			80	20	0.995493
1375	80		20		0.995493
1385	40		60		1.0
1403	20			80	0.995493
1409		25		75	0.996473
1410	25		75		0.996473
1426	85			14	0.993533
1428		85		14	0.993533
1513	28		71		1.0
1581	75		25		1.0
1634	16		83		0.994512
1635		16		83	0.994512
1636	16	83			0.994512
1638			83	16	0.994512
1667		25		75	0.996473
1699			66	33	0.997452
1728	25		75		0.996473
1729	25			75	0.996473
1732	75			25	0.996473
1800			40	60	1.0
1824	40		60		1.0
1833		60		40	1.0
1897	85	14			0.993533
1899	85			14	0.993533
1952	10		90		0.90298
1953	10	90			0.90298
1961	90			10	0.90298
1962		90		10	0.90298
1986	50		50		1.0
2010	18		72		0.999994
2016		40		60	1.0
2021	11	88			0.923564
2022	88	11			0.923564
2024			88	11	0.923564
2033		50		50	1.0
2034		25	75		1.0
2077		11		88	0.923564
2108		84		15	0.999986
2186	90			10	0.90298
2189		11	88		0.923564
2190	87			12	0.992554
2195	14		85		0.993533
2196	14	85			0.993533
2197		85		14	0.993533
2198	14	85			0.993533
2199	85			14	0.993533
2200			85	14	0.993533
2202	14	85			0.993533
2205		28		71	1.0
2218			80	20	0.995493
2219	80			20	0.995493
2227	66			33	0.997452
2229	33	66			0.997452
2230	66		33		0.997452
2231		33	33		0.997753
2280		75		25	0.996473
2292			25	75	0.996473
2297		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain