SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5877

Length: 1241 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5877 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28258	28/29
SustainPine v2.0	sp_v2.0_unigene66535	1/29

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AAA-type ATPase family protein [Arabidopsis thaliana] dbj\|BAF01763.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE82177.1\| AAA-type ATPase family protein [Arabidopsis thaliana]	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3	Peptidase M18	IPR001948	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Thiamin pyrophosphokinase	IPR006282	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Thiamin pyrophosphokinase, catalytic domain	IPR007371	-	-
Sma3	Thiamin pyrophosphokinase, vitamin B1-binding domain	IPR007373	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	MutL, C-terminal, dimerisation	IPR014790	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE60

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 359 - 388

Fln protein: RHH**KCS*WLSILQGIQNESRGSKKSLKDVVTENEFEKRLLADVIPPSDIGVTFEDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRESPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTTNRAKILKVILAKEELAPDVDLDAIASMTEGYSGSDLKNLCVTAAYCPIREILEKEKKEKDQAAADGRPPPALSVSDDVRRLNMTDMRYAHEQVCASVSSESANMTELLQWNDLYGEGGSRRKKALSYFM*

Protein Length: 360

Fln nts: CGTCATCACTAGTGAAAGTGTTCGTAATGGCTGAGCATATTACAGGGAATTCAAAATGAGTCACGAGGTTCCAAAAAGTCACTCAAGGATGTTGTAACTGAGAATGAGTTTGAAAAGAGACTTTTGGCTGATGTGATTCCACCAAGCGACATTGGAGTGACATTTGAGGATATCGGAGCTCTGGAGAATGTGAAAGATACACTGAAAGAGTTGGTGATGCTTCCTTTACAAAGGCCTGAGCTATTTTGTAAAGGTCAACTAACAAAGCCTTGCAAGGGTATCCTTCTATTTGGTCCTCCAGGAACCGGGAAAACAATGCTAGCCAAAGCTGTTGCAACGGAAGCCGGTGCCAATTTTATAAATATTTCAATGTCAAGCATTACATCAAAGTGGTTTGGTGAAGGTGAAAAGTATGTCAAAGCGGTATTTTCATTGGCGAGTAAAATTTCACCAAGTGTCATATTTGTTGACGAGGTTGACAGTATGTTGGGTCGAAGGGAGAGTCCTGGAGAACATGAGGCCATGCGTAAGATGAAAAATGAGTTTATGGTAAACTGGGATGGATTGCGCACTAAGGACAAGGAACGAGTACTAGTTCTTGCTGCAACCAATAGACCCTTTGATCTTGATGAAGCTGTCATCCGAAGACTTCCCCGGAGGTTAATGGTGAATTTGCCAGATACAACAAACAGGGCAAAAATCTTGAAGGTGATACTTGCAAAAGAGGAATTGGCACCAGATGTGGATTTGGATGCAATTGCAAGTATGACAGAGGGATATTCTGGGAGTGACCTCAAGAACTTGTGTGTTACAGCTGCATATTGCCCTATCCGAGAAATTCTGGAAAAAGAAAAGAAGGAAAAAGATCAAGCAGCAGCAGATGGCCGACCTCCACCAGCACTGAGTGTCAGCGATGATGTTCGTCGTTTGAATATGACTGACATGCGATATGCTCATGAACAGGTATGTGCTAGTGTTTCTTCAGAGTCAGCAAATATGACAGAGCTACTTCAGTGGAATGATCTGTATGGTGAAGGAGGTTCAAGGCGGAAAAAGGCACTTAGTTATTTTATGTAG___GCAAGCTATGTACATAAACAGTAATTACAAATTGGCCTGGACTCTTATTTATTACTTATGGAGGTGGTCCTTTGACAGCCTTTTCAAGTGGAATGTATCCTTCTATTTGGTCCTCCAGGAACCGGGAAAACAATGCTAGCCAAAGCTGTGCATTGGTTAACATT

Fln Alignment:

Contig5877___SKKSLKDVVTENEFEKRLLADVIPPSDIGVTFEDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRESPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTTNRAKILKVILAKEELAPDVDLDAIASMTEGYSGSDLKNLCVTAAYCPIREIL
D5AE60_________________SKRFGRPRVLTNPYEDVIACDVINPDDIDVTFDSIGGLEKVKQELYELVILPLQRPNLFGHCKLLSPPKGVLLYGPPGTGKTLLAKAIARESGAVFINVRVANLMSKWFGDSQKLVTAVFTLAQKLQPAIIFLDEVDSFLGQRRS-SEQEAFTNMKTEFMALWDGFTTDQTARVTVLAATNRPEELDEAILRRLPRVFEVGMPSCIQRAKILEVILKGENVEDDIDYDYIASLCEGYSGSDLTDLCKQAAYFPIRELL

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
430	25			75	0.996473
431	25		75		0.996473
433	75		25		0.996473
434	75			25	0.996473
472	20			80	0.995493
473	20		80		0.995493
475		80	20		0.995493
476	80			20	0.995493
681		66	16		0.988813
682		66		16	0.988813
683	83		16		0.994512
820		83	16		0.994512
821		83		16	0.994512
919	16			83	0.994512
920		16	83		0.994512
921	16		83		0.994512
922		83		16	0.994512
1060	10	90			0.90298
1063			90	10	0.90298
1064	90			10	0.90298
1117		87		12	0.992554
1163	25			75	0.996473
1164		25	75		0.996473
1166		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain