SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5869

Length: 980 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5869 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1227	23/23

Source	Descriptions	Term	Type	Identity
AutoFact	putative 1,3-beta glucanase [Oryza sativa Japonica Group] dbj\|BAD10703.1\| putative 1,3-beta glucanase [Oryza sativa Japonica Group]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	glucan -beta-glucosidase	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	71%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	71%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	71%
Blast2go	Glycosaminoglycan degradation	00531	71%
Blast2go	Metabolic pathways	01100	71%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	71%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%
Blast2go	cation binding	GO:0043169	Molecular Function	71%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ	IPR013114	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKR6

Fln msg: your sequence is shorter than subject: 237 - 511

Fln protein: EHSASRDGSADWSNSSDHISQSLTVIDFLVSRYSNNSMLLGIELLNEPLATTVPVDVLASYYSNGYQTVRKYSATTYVIMCQRIGNADPHELYQINDAFSNIVVDVHYYNLFDDYFDNKTAQDNIDFILKNREPQVEALNSTNGPLIFVGEWTNEWKVQGASRSEYQQFGDAQLQAYEKASFGWSYWTLKNEEKHWDFEWNIKHNYLRLGNSRATSNKSISWRIYAFLLIFGCIYV*

Protein Length: 238

Fln nts: TGGAGCATAGTGCCAGCAGAGATGGATCTGCTGACTGGTCTAACTCTTCAGACCATATTTCCCAAAGTTTAACTGTTATTGATTTCCTTGTTTCGAGATATAGTAACAATAGTATGCTCTTAGGTATTGAATTGCTGAATGAACCTCTAGCAACAACTGTTCCTGTGGATGTTTTGGCTTCCTATTATTCAAATGGCTATCAAACTGTGCGGAAGTACTCTGCCACAACATATGTTATCATGTGCCAGAGGATTGGAAATGCTGATCCACATGAGCTGTATCAAATAAATGATGCATTTTCAAATATCGTTGTTGATGTTCACTACTATAATCTTTTTGATGATTATTTTGATAACAAGACTGCCCAAGATAATATTGACTTCATCTTGAAGAACAGGGAACCCCAAGTGGAAGCTCTAAACAGCACAAATGGTCCTCTCATATTTGTCGGTGAATGGACAAATGAGTGGAAGGTGCAAGGAGCTTCAAGGTCGGAATATCAACAGTTTGGTGATGCACAATTACAAGCTTATGAAAAGGCTTCATTTGGTTGGTCATATTGGACTCTAAAGAACGAAGAGAAGCACTGGGATTTTGAGTGGAATATCAAGCACAACTACCTTAGATTAGGTAATTCGAGGGCAACATCAAACAAGAGTATATCTTGGAGAATATATGCCTTTTTGTTGATCTTTGGGTGTATTTATGTATGA___GACTTGAGTAGCCGGGCAATCTGACACTTTAATGCTGCTAAAAAATAGCTGGTGGTTCTTTCTGAAATAGATTTGACATATATGATGGGACAATTCCTACATTTTAATCCACTGAAGGGCAACAGTGATTGGTACTTGCAGTGATTCCATGATTCAATTCTTGCTCTTTTTCCAGAGCATAGAATTATATCAACCTCCTGAAGTGTGGAATAAACTTATGACAGAGGACATCACCAGGACATTAAACAGAATCTAAGCAATTACATT

Fln Alignment:

Contig5869___HSASRDGSADWSNSSDHISQSLTVIDFLVSRYSNNSMLLGIELLNEPLATT------VPVDVLASYYSNGYQTVRKYSATTYVIMCQRIGNADPHELYQINDAFSNIVVDVHYYNLFDDY-FDNKTAQDNIDFILKNREPQVEALNSTNGPLIFVGEWTNEWKVQGASRSEYQQFGDAQLQAYEKASFGWSYWTLKNEEKHWDFEWNIKHNYLRL
B8LKR6_________________HSGTRDGYLEWPNSQDNIDKSISVIDFLAGRYASNSALLGIELLNEPRASTDPNAPGVPLDTLKTYYKRGYDTIRKHSPSAYVIMCNRIGPADAKELFDINNGLTRTVVDVHYYNLYDDSTFKSMSVQQNIDYINNNRAQILQSLTSANGPLIYVGEWTNEWEYQGASMSDYQRFGKAQLQVYGTATFGWSYWTLKNVQNHWSFEWMVQNNYLQL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
621	33		66		0.997452
623		66	33		0.997452
718	16	83			0.994512
721		83		16	0.994512
736	14		85		0.993533
737	14		85		0.993533
738		85		14	0.993533
739	85		14		0.993533
740		85		14	0.993533
845	11	88			0.923564
847			88	11	0.923564
848		88	11		0.923564
849	88			11	0.923564
903	85			14	0.993533
965	20		80		0.995493
969			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain