SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5865

Length: 1977 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene5865
AATGTGAATCACAAAACCCTAATTTCCATTGAATCCTGTAAAACCCTGGCTACGCTAACTGCTGCTCTTAGGTAGGAGTATGGCTCAAAATCATTCACTGGTTCCTCCTGAATCGCCGGTGTTCTCAGAGCTGTCGATCGTGGTGGTGCCGTCGAATAAATGGGTCCCGGCTGTTGCCCGCTTTGGCCGTGACGCCTCTGGCCGATTTATAGAATTCAAGTCCTCCGCCGATTCAACGGAGTCTTTCGATATCAAAACCTATATCCATCATTCTCAGCTTTTTAGAATGGGGCCCACTTTGTCAATGTGGGTAGCAAATGATAATTCATCAACCTATGGAGCAGAGAGCATCTGTCAAGCCATTACGATTCAATTCCCAACAGAAGCAGCAGTCTTTTCATTTGGTTTGACTGTTCAGGAGTGGAATACAGATACATCAGTTGCAGGAGCTGGGGAGAAGTTGGCCAATGGTTCAAGTGATTCATCTTGGAAACTTAACAAGTTTGATAAGAAGATTGAAGCATCATCTGCAAAAATGTATTTCCACTATTATGGCCAACTTCTTCACCAGCAGAACATGTTGCAAGATTATGTGCGGACAGGGTCATATTATGCCGCAGTCATAGAAAACCGTATAGATTTTCATGGTCGCATTGTTGTTGATGTGGGGGCTGGAAGTGGAATTCTCTCTCTGTTTGCAGCACAGGCTGGTGCAAAGCATGTCTATGCTGTGGAAGCATCAGAAATGGTAGATTATGCACGCAGACTTGTTGCTGGAAATCCATCTTTGGGTCAGCATATAACAGTGATCAAGGGGAAAATTGAAGAGGTTGAGTTGCCAGAGAAAGCAGATATTCTAATATCAGAGCCCATGGGAACATTATTACTCAATGAAAGGATGCTAGAAACATATGTTATTGCGAGGGACAGGTTCCTTAGTCCTACTGGAAAAATGTTTCCCACTATGGGCAGGATACATATGGCTCCTTTTAGTGATGAGTATCTATATGTTGAAATTGCAAACAAGGCTTTGTTTTGGCAACAACAAAATTACTATGGTGTTGACTTGACACCATTGCATGGTTCTGCGTTTCAGGGCTATTTCTCCCAGCCTGTTGTAGACGCTTTTGACCCAAGATTGCTTGTGGCCCCTCCTATCTCTCACACAATTGACTTTACAAAGGTCAAGGAAGAAGAGTTGTATGAAATTGACATTCCCTTGAACTTTACTGCATCTGTGGGCACTCGAGTTCATGGCCTAGCATGTTGGTTTGATGTTTTATTCAATGGAAGTGCTGTACAACGATGGCTGACTACTGCACCTGGAGCTCCAACTACGCACTGGTATCAACTTCGTTGTGTCTTGTCTCAACCTATTTATGTAATGGCTGGACAGGTTATTACAGGTCGGCTCCATATGGTTGCCCATAGTGCACAGAGCTATACTATGTATCTCACGATGTCAGCGAAGATGTGGGGTGCTGGCGCTGATCAAGGTGGTATATTGCAAACTTCTTCAAGCAAGCTTGATCTAAAGGAACCATATTATCGCATGTCTCAACCTCAAGTTTATGCCTGGTCTCAGGATCAATCTACTCAGCAACTAGTGCAGCAGCAGGCAAATGGACTTCCATCACAGCAAGTTGATGGCACAATCCTTGTTCAACAGCAGCCCATACAAGCTTCTGTGATTTTGCAACAGCAACAGCACCAACAACAGTCATCTCAGAATTTCCAACAGCAATCTCTGTTTCTCCAATCACAATAGAAATTTGGATTAAGCATGTATCAGTATCTACATTTTTTCTTAGTGCTGGTCAATTCCTGTGTATTCTTATAGATATGATGTTCAAGATCCCAGCAAGGTTTAGCAAGGTATAGCCTTTTTGAAATATAATGTGTGACGATCCTATAATTTAATGGGAAAGTAGGGGGAAATTTATTCGGGCACTTGAGAATTTCACTTTGTATTACATT

Ace file of the UniGene biog3_v1.0_unigene5865 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1298	83/85
SustainPine v2.0	sp_v2.0_unigene16003	1/85

Source	Descriptions	Term	Type	Identity
AutoFact	Protein arginine n-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RT51_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	histone-arginine methyltransferase carm1	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone-arginine N-methyltransferase.	EC:2.1.1.125	-	0.0	83%
Blast2go	[Myelin basic protein]-arginine N-methyltransferase.	EC:2.1.1.126	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	histone H3-R17 methylation	GO:0034971	Biological Process	83%
Blast2go	histone H3-R2 methylation	GO:0034970	Biological Process	83%
Blast2go	regulation of flower development	GO:0009909	Biological Process	83%
Blast2go	peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	GO:0019919	Biological Process	83%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	83%
Blast2go	histone H3-R26 methylation	GO:0034972	Biological Process	83%
Blast2go	protein-arginine omega-N monomethyltransferase activity	GO:0035241	Molecular Function	83%
Blast2go	histone-arginine N-methyltransferase activity	GO:0008469	Molecular Function	83%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	83%
Blast2go	[myelin basic protein]-arginine N-methyltransferase activity	GO:0016277	Molecular Function	83%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	83%
Blast2go	protein-arginine omega-N asymmetric methyltransferase activity	GO:0035242	Molecular Function	83%
Blast2go	cytoplasm	GO:0005737	Cellular Component	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Methyltransferase small	IPR007848	-	-
Sma3	Ribosomal L11 methyltransferase, PrmA	IPR010456	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3		IPR015706	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABX2

Fln msg: your sequence is longer than subject: 563 - 409

Fln protein: MAQNHSLVPPESPVFSELSIVVVPSNKWVPAVARFGRDASGRFIEFKSSADSTESFDIKTYIHHSQLFRMGPTLSMWVANDNSSTYGAESICQAITIQFPTEAAVFSFGLTVQEWNTDTSVAGAGEKLANGSSDSSWKLNKFDKKIEASSAKMYFHYYGQLLHQQNMLQDYVRTGSYYAAVIENRIDFHGRIVVDVGAGSGILSLFAAQAGAKHVYAVEASEMVDYARRLVAGNPSLGQHITVIKGKIEEVELPEKADILISEPMGTLLLNERMLETYVIARDRFLSPTGKMFPTMGRIHMAPFSDEYLYVEIANKALFWQQQNYYGVDLTPLHGSAFQGYFSQPVVDAFDPRLLVAPPISHTIDFTKVKEEELYEIDIPLNFTASVGTRVHGLACWFDVLFNGSAVQRWLTTAPGAPTTHWYQLRCVLSQPIYVMAGQVITGRLHMVAHSAQSYTMYLTMSAKMWGAGADQGGILQTSSSKLDLKEPYYRMSQPQVYAWSQDQSTQQLVQQQANGLPSQQVDGTILVQQQPIQASVILQQQQHQQQSSQNFQQQSLFLQSQ*

Protein Length: 564

Fln nts: AATGTGAATCACAAAACCCTAATTTCCATTGAATCCTGTAAAACCCTGGCTACGCTAACTGCTGCTCTTAGGTAGGAGT_-_ATGGCTCAAAATCATTCACTGGTTCCTCCTGAATCGCCGGTGTTCTCAGAGCTGTCGATCGTGGTGGTGCCGTCGAATAAATGGGTCCCGGCTGTTGCCCGCTTTGGCCGTGACGCCTCTGGCCGATTTATAGAATTCAAGTCCTCCGCCGATTCAACGGAGTCTTTCGATATCAAAACCTATATCCATCATTCTCAGCTTTTTAGAATGGGGCCCACTTTGTCAATGTGGGTAGCAAATGATAATTCATCAACCTATGGAGCAGAGAGCATCTGTCAAGCCATTACGATTCAATTCCCAACAGAAGCAGCAGTCTTTTCATTTGGTTTGACTGTTCAGGAGTGGAATACAGATACATCAGTTGCAGGAGCTGGGGAGAAGTTGGCCAATGGTTCAAGTGATTCATCTTGGAAACTTAACAAGTTTGATAAGAAGATTGAAGCATCATCTGCAAAAATGTATTTCCACTATTATGGCCAACTTCTTCACCAGCAGAACATGTTGCAAGATTATGTGCGGACAGGGTCATATTATGCCGCAGTCATAGAAAACCGTATAGATTTTCATGGTCGCATTGTTGTTGATGTGGGGGCTGGAAGTGGAATTCTCTCTCTGTTTGCAGCACAGGCTGGTGCAAAGCATGTCTATGCTGTGGAAGCATCAGAAATGGTAGATTATGCACGCAGACTTGTTGCTGGAAATCCATCTTTGGGTCAGCATATAACAGTGATCAAGGGGAAAATTGAAGAGGTTGAGTTGCCAGAGAAAGCAGATATTCTAATATCAGAGCCCATGGGAACATTATTACTCAATGAAAGGATGCTAGAAACATATGTTATTGCGAGGGACAGGTTCCTTAGTCCTACTGGAAAAATGTTTCCCACTATGGGCAGGATACATATGGCTCCTTTTAGTGATGAGTATCTATATGTTGAAATTGCAAACAAGGCTTTGTTTTGGCAACAACAAAATTACTATGGTGTTGACTTGACACCATTGCATGGTTCTGCGTTTCAGGGCTATTTCTCCCAGCCTGTTGTAGACGCTTTTGACCCAAGATTGCTTGTGGCCCCTCCTATCTCTCACACAATTGACTTTACAAAGGTCAAGGAAGAAGAGTTGTATGAAATTGACATTCCCTTGAACTTTACTGCATCTGTGGGCACTCGAGTTCATGGCCTAGCATGTTGGTTTGATGTTTTATTCAATGGAAGTGCTGTACAACGATGGCTGACTACTGCACCTGGAGCTCCAACTACGCACTGGTATCAACTTCGTTGTGTCTTGTCTCAACCTATTTATGTAATGGCTGGACAGGTTATTACAGGTCGGCTCCATATGGTTGCCCATAGTGCACAGAGCTATACTATGTATCTCACGATGTCAGCGAAGATGTGGGGTGCTGGCGCTGATCAAGGTGGTATATTGCAAACTTCTTCAAGCAAGCTTGATCTAAAGGAACCATATTATCGCATGTCTCAACCTCAAGTTTATGCCTGGTCTCAGGATCAATCTACTCAGCAACTAGTGCAGCAGCAGGCAAATGGACTTCCATCACAGCAAGTTGATGGCACAATCCTTGTTCAACAGCAGCCCATACAAGCTTCTGTGATTTTGCAACAGCAACAGCACCAACAACAGTCATCTCAGAATTTCCAACAGCAATCTCTGTTTCTCCAATCACAATAG___AAATTTGGATTAAGCATGTATCAGTATCTACATTTTTTCTTAGTGCTGGTCAATTCCTGTGTATTCTTATAGATATGATGTTCAAGATCCCAGCAAGGTTTAGCAAGGTATAGCCTTTTTGAAATATAATGTGTGACGATCCTATAATTTAATGGGAAAGTAGGGGGAAATTTATTCGGGCACTTGAGAATTTCACTTTGTATTACATT

Fln Alignment:

Contig5865___MYFHYYGQLLHQQNMLQDYVRTGSYYAAVIENRIDFHGRIVVDVGAGSGILSLFAAQAGAKHVYAVEASEMVDYARRLVAGNPSLGQHITVIKGKIEEVELPEKADILISEPMGTLLLNERMLETYVIARDRFLSPTGKMFPTMGRIHMAPFSDEYLYVEIANKALFWQQQNYYGVDLTPLHGSAFQGYFSQPVVDAFDPRLLVAPPISHTIDFTKVKEEELYEIDIPLNFTASVGTRVHGLACWFDVLFNGSAVQRWLTTAPGAPTTHWYQLRCVLSQPIYVMAGQVITGRLHMVAHSAQSYTMYLTMSAKMWGAGADQGGILQTSSSKLDLKEPYYRMSQPQVYAWSXXXXXXXXXXXQANGLPSQQVDGTILV
D5ABX2_________________MYFHYYGQLLHQQNMLQDYVRTGSYYAAVIENRIDFHGRIVVDVGAGSGILSLFAAQAGAKHVYAVEASEMVDYARRLVAGNPSLGQHITVIKGKIEEVELPEKADILISEPMGTLLLNERMLESYVIARDRFLSPTGKMFPTIGRIHMAPFSDEYLYVEIANKALFWQQQNYYGVDLTALHGPAFQCYFSQPVVDAFDPRLLVAPPISHTIDFTKVKEEELYEIDIPLNFTASVGTRVHGLACWFDVLFNGSAVQRWLTTAPGAPTTHWYQLRCVLSQPIYVMAGQVITGRLHMVAHSAQSYTMYLTMSAKMWGAGADQGGILQTSSSKLDLKEPYYRMSQPQVYAWSQDQSTQQLVQQQANGIPSQQVDGTILV

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1793	20	80			0.995493
1796	80			20	0.995493
1797	80			20	0.995493
1908	16	83			0.994512
1909	20			80	0.995493
1910	60	20		20	0.99255
1912			75	25	0.996473
1913	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain