SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5829

Length: 941 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5829

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14040	13/20
SustainPine v2.0	sp_v2.0_unigene15612	6/20

Source	Descriptions	Term	Type	Identity
AutoFact	putative purple acid phosphatase precursor [Glycine max]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	purple acid phosphatase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acid phosphatase.	EC:3.1.3.2	-	0.0	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminobenzoate degradation	00627		0.0	73%
Blast2go	Riboflavin metabolism	00740		0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of anthocyanin metabolic process	GO:0031539	Biological Process	73%
Blast2go	gibberellic acid mediated signaling pathway	GO:0009740	Biological Process	73%
Blast2go	red or far-red light signaling pathway	GO:0010017	Biological Process	73%
Blast2go	de-etiolation	GO:0009704	Biological Process	73%
Blast2go	manganese ion binding	GO:0030145	Molecular Function	73%
Blast2go	identical protein binding	GO:0042802	Molecular Function	73%
Blast2go	DNA binding	GO:0003677	Molecular Function	73%
Blast2go	acid phosphatase activity	GO:0003993	Molecular Function	73%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	73%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	73%
Blast2go	extracellular space	GO:0005615	Cellular Component	73%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	73%
Blast2go	vacuole	GO:0005773	Cellular Component	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRL4

Fln msg: Overlapping hits, possible frame ERROR between 524 and 521, your sequence is shorter than subject: 297 - 352

Fln protein: VVGDWGRKGLYNQSEVATQMGRIGEELGIDFVISTGDNFYENGLTGTDDPSFEESFSGIYTAKSLQTPWYSVLGNHDYRGDALAQLSPSLRSKDQRWQCERSFILKYTFCSHGLQSGGGSADLFFVDTTPFVDHYWKPSKHTYDWRGVLPREKYLHQQLQDLSVALEASTATxxxVIGHHTIRSVGSHGDTEELFPQLLPIIEAYGVDLYVNGHDHCLEHISSVNSPLQLLTSGAGSKSWRGMKEGANKEGLQFFHNGQGFMSLQIQATLLHAVFYDVQGNTVHELNLMKAGMSAS*

Protein Length: 298

Fln nts: TGGTAGTTGGAGATTGGGGCAGAAAAGGGCTTTACAACCAGTCTGAAGTGGCCACTCAGATGGGAAGAATAGGAGAAGAGCTGGGCATCGATTTCGTCATTTCTACTGGTGACAATTTTTATGAGAATGGATTGACTGGCACAGACGACCCAAGCTTTGAGGAATCGTTTTCTGGAATCTACACAGCCAAAAGCTTGCAAACGCCATGGTATAGCGTGTTAGGAAACCATGATTACCGAGGGGATGCCTTAGCTCAACTCAGCCCTTCTCTGAGAAGCAAAGATCAGCGCTGGCAGTGTGAGAGATCCTTCATTCTCAAGTACACCTTTTGCTCACATGGCCTTCAGTCCGGTGGAGGCAGTGCCGACCTTTTCTTCGTGGACACAACCCCGTTTGTTGATCACTATTGGAAGCCAAGTAAACATACATATGATTGGAGAGGGGTTCTTCCTCGAGAAAAGTATTTGCACCAGCAGTTACAGGACCTGTCAGTGGCTTTGGAGGCTTCGACTGCAACAxxxxxxxxxGTGATTGGTCATCATACTATTCGCAGCGTTGGCTCACATGGCGACACAGAGGAACTGTTTCCACAGCTATTGCCCATTATTGAAGCTTATGGAGTGGACCTGTATGTCAACGGGCATGACCACTGTTTGGAGCATATTAGCAGTGTTAACAGCCCTCTACAGCTTTTGACAAGCGGAGCGGGGTCTAAATCTTGGAGAGGAATGAAAGAAGGGGCGAACAAGGAGGGTTTGCAGTTCTTTCACAATGGCCAGGGTTTTATGTCTCTACAAATTCAGGCAACATTGTTGCACGCTGTGTTCTATGATGTCCAAGGAAACACAGTACATGAACTGAATTTGATGAAGGCAGGCATGTCTGCGTCCTAGATGTATGAAGTCCGTGTATAATACATCTATCTATGGCATAAGATACATT

Fln Alignment:

Contig5829___VVGDWGRKGLYNQSEVATQMGRIGEELGIDFVISTGDNFYENGLTGTDDPSFEESFSGIYTAKSLQTPWYSVLGNHDYRGDALAQLSPSLRSKDQRWQCERSFILKYTFCSHGLQSGGGSADLFFVDTTPFVDHYWKPSKHTYDWRGVLPREKYLHQQLQDLSVALEASTATWxIVIGHHTIRSVGSHGDTEELFPQLLPIIEAYGVDLYVNGHDHCLEHISSVNSPLQLLTSGAGSKSWRGMKEGANKEGLQFFHNGQGFMSLQIQATLLHAVFYDVQGNTVHELNLMKAGMSAS
A9NRL4_________________VVGDWGRKGYYNQSEVATQMGRIGEELDIDFVISTGDNFYEEGLTGTDDPSFEESFSGIYTAKSLQTPWYSVLGNHDYRGDALAQLSPSLRNKDHRWQCERSFILKYTICPHGLQSGGGSADLFFVDTIPFVDHYWEPSKHQYDWRGVLPREKYLNQQLQDLSVALEASTATWxIVIGHHTIRSVGSHGDTLELFPQLLPIIESYGVDLYVNGHDHCLEHISSVNSPLQFLTSGGGSKAWRGMKQGANMEGLQFFHNGQGFISVQIQATLLHVVFYDVQGNSVHELNLLKEALSES

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
155		85		14	0.993533
215		85		14	0.993533
216	14		85		0.993533
218			85	14	0.993533
331	25		75		1.0
334		12		87	0.992554
335		75		25	1.0
366	16	83			0.994512
376	16			83	0.994512
377		16		83	0.994512
378	16	83			0.994512
379			83	16	0.994512
389		80		20	0.995493
390		80		20	0.995493
447	25			75	0.996473
530		14	85		0.993533
550	16			83	0.994512
552	16		83		0.994512
553		83		16	0.994512
554	83			16	0.994512
563	33			66	1.0
640		60		40	1.0
652		60		40	1.0
673		40		60	1.0
726		16	83		0.994512
728			83	16	0.994512
729			83	16	0.994512
791	14			85	0.993533
793	14			85	0.993533
794		85		14	0.993533
796	83		16		0.994512
821	20		80		0.995493
823	20			80	0.995493
824			80	20	0.995493
921		33	66		0.997452
924		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain