SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5680

Length: 540 nt

UniGene Fasta

>biog3_v1.0_unigene5680
AATGTTAACCAATTTAACCCTCTTTCCCTGGGTAAGTCGCGCCAGCAGGATCCCTCTACAGTGTTTGTAGCAGGAGCCACGGGCCAGTTTGGTGCCAGGATTTCACAGAAGCTGTTACGCCAAGGTTTTTCGGTTAGAGCGGCAGTTTCAGACCTCTCATTTGCGCAAGAATTAGCACAGTTTGCAACCCAATATAAAGGATAATTGCTAGCAGAGGATGCCAAGCGTCTTAATTGCAGTGGAATTCAGTTTTGAGGATATTGAATCCACAGCTAAAGCCATAGGAAATGCCAGTAAAGCAGTGGTATCAATAGGACCCACAGAGGATGGACCTAGTTCCAAAGTTACTACAACTGATGCTTTGAACGTTATTGAAGCAGCCAAGCTAGCAAATGTGAATCATATTGTTGTTGTTTACGAATCTGATGGAGCGTCTTCAAGTGTTCTTGATGAAATCTCTTCATTTTTCAGCAACTTGTTTGGAAAATCAGAAATATCATTATCAGAGCTTACTGAAAGAATTGTGGAAATGGGAACATT

Ace file of the UniGene biog3_v1.0_unigene5680

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10525	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	protein plastid transcriptionally active 16 [Arabidopsis thaliana] emb\|CAB51187.1\| putative protein [Arabidopsis thaliana] gb\|AEE78204.1\| protein plastid transcriptionally active 16 [Arabidopsis thaliana]	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	protein plastid transcriptionally active 16	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	circadian rhythm	GO:0007623	Biological Process	65%
Blast2go	metabolic process	GO:0008152	Biological Process	65%
Blast2go	binding	GO:0005488	Molecular Function	65%
Blast2go	catalytic activity	GO:0003824	Molecular Function	65%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	65%
Blast2go	plastid chromosome	GO:0009508	Cellular Component	65%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM72

Fln msg: Overlapping hits, possible frame ERROR between 252 and 230, Distance to subject end: 231 aas, your sequence is shorter than subject: 180 - 520

Fln protein: NVNQFNPLSLGKSRQQDPSTVFVAGATGQFGARISQKLLRQGFSVRAAVSDLSFAQELAQFATQYKG*LLAEDAKRxxxxxxxxxEDIESTAKAIGNASKAVVSIGPTEDGPSSKVTTTDALNVIEAAKLANVNHIVVVYESDGASSSVLDEISSFFSNLFGKSEISLSELTERIVEMGT

Protein Length: 181

Fln nts: AATGTTAACCAATTTAACCCTCTTTCCCTGGGTAAGTCGCGCCAGCAGGATCCCTCTACAGTGTTTGTAGCAGGAGCCACGGGCCAGTTTGGTGCCAGGATTTCACAGAAGCTGTTACGCCAAGGTTTTTCGGTTAGAGCGGCAGTTTCAGACCTCTCATTTGCGCAAGAATTAGCACAGTTTGCAACCCAATATAAAGGATAATTGCTAGCAGAGGATGCCAAGCGTxxxxxxxxxxxxxxxxxxxxxxxxxxxGAGGATATTGAATCCACAGCTAAAGCCATAGGAAATGCCAGTAAAGCAGTGGTATCAATAGGACCCACAGAGGATGGACCTAGTTCCAAAGTTACTACAACTGATGCTTTGAACGTTATTGAAGCAGCCAAGCTAGCAAATGTGAATCATATTGTTGTTGTTTACGAATCTGATGGAGCGTCTTCAAGTGTTCTTGATGAAATCTCTTCATTTTTCAGCAACTTGTTTGGAAAATCAGAAATATCATTATCAGAGCTTACTGAAAGAATTGTGGAAATGGGAACATT

Fln Alignment:

Contig5680___NQFNPLSLGKSRQQDPSTVFVAGATGQFGARISQKLLRQGFSVRAAVSDLSFAQELAQFATQYKG*LLAEDAKRxxxxxxxxEDIESTAKAIGNASKAVVSIGPTEDGPSSKVTTTDALNVIEAAKLANVNHIVVVYESDGASSSVLDEISSFFSNLFGKSEISLSELTERIVEMG
B8LM72_________________NQFNPLSLGRTRQQDPSTVFVAGATGQFGARISQKLLRQGFVVRAAVSDLSLAQELAQFATQYK-IIAAEDAKRxxxxxxxxEDIESTAKAIGNASKAVVSIGPTEDGPSSKVTTADALNVIEAAKLANVNHIVVVYESDGASSNVLDGISSFFSNLFGKSEMSLAELIERIVEMG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain