SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5651

Length: 1390 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5651 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15718	37/40
SustainPine v2.0	sp_v2.0_unigene15799	2/40
SustainPine v2.0	sp_v2.0_unigene69688	1/40

Source	Descriptions	Term	Type	Identity
AutoFact	putative Der1-like family protein [Cynodon dactylon]	-	-	61%
FL-Next	sp=Derlin-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	60%
Blast2go	derlin- -like	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	root hair cell tip growth	GO:0048768	Biological Process	78%
Blast2go	response to red light	GO:0010114	Biological Process	78%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	78%
Blast2go	response to far red light	GO:0010218	Biological Process	78%
Blast2go	response to high light intensity	GO:0009644	Biological Process	78%
Blast2go	cytoplasm	GO:0005737	Cellular Component	78%
Blast2go	membrane	GO:0016020	Cellular Component	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	0.0	-
Sma3	Derlin	IPR007599	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8VZU9

Fln msg: your sequence is shorter than subject: 241 - 266

Fln protein: MSSPAEYYNSLPPVSKAYGTLCLLTTTAFQLGLINPVYMYLDYDLVVKQLQIWRLVTNFFFLGPFSINFAIRLLLIARYGVQLERGPFDKRTADFLWMMIFAALSLLAFSLVPALRSPFLGISLVFMLVYIWAREYPNAQVNISGLFTLKGFYLPWVMLALNVIFGSRLLPDLMGIIVGHLYYFLTELHPRTGGRNILKTPLWVHKIVARWNVGVQATNPVRVEPTAGTAFRGRSYRIGR*

Protein Length: 242

Fln nts: TGAATATTGTGACGCAAACCAATTTTGGAATGCGAACGAAGCTTCTTGAGGTGACTTACCATTTCCCATGAGGGTCTTCGTCGCTCGTCTTTTATTCGCGTGATCTTCTAGACTTGAGTTTACTCTGGGCGATTATTTTATCGGGATTTAACTCTGCGAGAAGCGTCATACACAGACGACTGCAAA_-_ATGTCTTCCCCTGCAGAGTATTACAATTCACTTCCTCCAGTGAGTAAGGCGTATGGAACCCTTTGCCTTCTAACTACCACAGCTTTTCAGTTGGGATTGATTAATCCAGTATATATGTATCTGGATTACGATCTTGTGGTTAAGCAACTACAGATATGGAGGCTTGTTACCAACTTCTTTTTTCTGGGCCCTTTTTCTATCAATTTTGCAATTCGTCTACTATTAATAGCAAGGTATGGTGTACAGTTAGAAAGAGGTCCATTTGATAAACGGACAGCCGACTTTTTGTGGATGATGATCTTTGCGGCATTGTCTCTTCTTGCGTTTTCCCTTGTTCCTGCTTTGAGGTCACCATTCCTGGGAATATCCTTGGTTTTCATGCTTGTATACATTTGGGCAAGGGAGTATCCAAATGCCCAAGTCAACATATCTGGCCTTTTTACGCTCAAGGGATTCTATTTGCCCTGGGTAATGCTAGCCTTGAATGTGATTTTTGGTTCACGACTACTTCCAGATCTTATGGGCATCATTGTTGGGCATCTTTATTACTTTCTGACAGAGCTCCATCCTCGTACTGGTGGAAGAAATATACTGAAGACACCGCTTTGGGTACACAAGATTGTTGCACGTTGGAATGTAGGAGTTCAAGCCACCAATCCTGTACGAGTGGAACCAACAGCAGGCACAGCATTCAGAGGAAGAAGCTACAGGATTGGCCGTTAA___CCTTTGTTTGAACAACAGCCATTTTGTTCATCAAGAATTGAGTTTGGTTTGTTCTCTTTGAGCAATTTTGAGACGATACTAAAGGGGCTGGATTTTTCATCCATAGTTTCAAGTTGGATACGTGACCGTAGTTTTTCATTTTCATATTACCAAAACATTAGAATTAGTTTGATTAACATGTTCCTTGTTTTAAAGGCGGTTACTGCTCAGTTGATAACAATGTACACTAATGAATTTGATATTCTTTTGATGAAGGTTCGGTTCAGAAAATGTTTCTGGAACATCAAGGAATTTCCAGAGCATTTTATTTACTTAATCATGGTATTGACCCGTTTTAAAAAATTTCAGTGATATGCACAAAGTCTTCTCTTCAATTATGTTTTATGTCGGTAGCTTTGCTGCTATACCTTAAACTACAATTAATAGTGAACTTGTAACCCTGTTCTACAAAAAGTGAATTTCATCATTCACATGGTACATT

Fln Alignment:

Contig5651___MSSPAEYYNSLPPVSKAYGTLCLLTTTAFQLGLINPVYMYLDYDLVVKQLQIWRLVTNFFFLGPFSINFAIRLLLIARYGVQLERGPFDKRTADFLWMMIXXXXXXXXXXLVPALRSPFLGISLVFMLVYIWAREYPNAQVNISGLFTLKGFYLPWVMLALNVIFGSRLLPDLMGIIVGHLYYFLTELHPRTGGRNILKTPLWVHKIVARWNV-----------GVQATNP--------------VRVEP-TAGTAFRGRSYRI
Q8VZU9_________________MSSPGEFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLFFLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTPFLGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGHLYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVASVRQAGGVGAAGPGAGGGVGGGGAYSSARAPPESSNTAFRGRSYRL

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
161	16	83			0.994512
242	85		14		0.993533
286	12	75		12	0.975346
287	12	87			0.992554
336	12			87	0.992554
341	85			14	0.993533
394	12		87		0.992554
395		87		12	0.992554
396		87	12		0.992554
397		87		12	0.992554
425	87			12	0.992554
426	87			12	0.992554
605	11		88		0.923564
606			88	11	0.923564
764	16		83		0.999991
766	75			16	0.99999
860	10	90			0.90298
862		90		10	0.90298
869			88	11	0.923564
870			88	11	0.923564
897	87			12	0.992554
972	83			16	0.994512
990		20	80		0.995493
992		80		20	0.995493
993			80	20	0.995493
996	33			66	1.0
1000	66			33	1.0
1190	14			85	0.993533
1191	14	85			0.993533
1195	85			14	0.993533
1230	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain