SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5626

Length: 571 nt

UniGene Fasta

>biog3_v1.0_unigene5626
AATGTGGAGCGCTTGAGAACCAGGGAACTGGACACTCCTGAATTGCTAGAACAATTGCCAGCTTTGCAGCAATATCTTTATCGTCTAATGGGGTGTCAGCCGGAAGGGGCAGCTATATCCAATCATGTGATACAGTATGCACTCACAGCGGTTTCAAGGGAGAGCATTAAACTTTATACTGCAATTAATGATGCCACCATCAACCTTGTTGACAAGTTCTTTGAAATGCAACGCCATGATGCTATTAAGGCTCTTGAGATCTATAGGCGAGCTGGTAAACAGGCTGAAAAATTATCAGAGTTTTATGAAGTTTGCAAAGGTCTTGACCTTGGACGTGGTTTTAAATTTCCTACACTTGAACAGCCACCAGCATCATTCGTTTCTGCAATGGAAGAGTATGTTAGAGATGCCCCAAGAGCATCATCAGTCCGTAGGGAGTCGAAGACTGAGTCTGTTCCAAAGGTTTTATCTCTGGAGTACAAGAAAAAATCAGAACCCCAGGATGATGCACCACCACCACCTCCTCCTCCACCTCCAGAACCAGTTAAAGAAAGTGCTGCACCTGTAGAAA

Ace file of the UniGene biog3_v1.0_unigene5626

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8042	8/9

Source	Descriptions	Term	Type	Identity
AutoFact	putative clathrin assembly protein [Arabidopsis thaliana] sp\|Q9LHS0.1\|CAP10_ARATH RecName: Full=Putative clathrin assembly protein At5g35200 dbj\|BAA98205.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL91173.1\| unknown protein [Arabidopsis thalian	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	clathrin assembly	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	clathrin coat assembly	GO:0048268	Biological Process	76%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	76%
Blast2go	1-phosphatidylinositol binding	GO:0005545	Molecular Function	76%
Blast2go	clathrin binding	GO:0030276	Molecular Function	76%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%
Blast2go	clathrin coat	GO:0030118	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	ANTH	IPR011417	-	-
Sma3	Clathrin adaptor, phosphoinositide-binding, GAT-like	IPR014712	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Epsin-like, N-terminal	IPR013809	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKD7

Fln msg: Distance to subject end: 192 aas, your sequence is shorter than subject: 190 - 547

Fln protein: NVERLRTRELDTPELLEQLPALQQYLYRLMGCQPEGAAISNHVIQYALTAVSRESIKLYTAINDATINLVDKFFEMQRHDAIKALEIYRRAGKQAEKLSEFYEVCKGLDLGRGFKFPTLEQPPASFVSAMEEYVRDAPRASSVRRESKTESVPKVLSLEYKKKSEPQDDAPPPPPPPPPEPVKESAAPVE

Protein Length: 191

Fln nts: AATGTGGAGCGCTTGAGAACCAGGGAACTGGACACTCCTGAATTGCTAGAACAATTGCCAGCTTTGCAGCAATATCTTTATCGTCTAATGGGGTGTCAGCCGGAAGGGGCAGCTATATCCAATCATGTGATACAGTATGCACTCACAGCGGTTTCAAGGGAGAGCATTAAACTTTATACTGCAATTAATGATGCCACCATCAACCTTGTTGACAAGTTCTTTGAAATGCAACGCCATGATGCTATTAAGGCTCTTGAGATCTATAGGCGAGCTGGTAAACAGGCTGAAAAATTATCAGAGTTTTATGAAGTTTGCAAAGGTCTTGACCTTGGACGTGGTTTTAAATTTCCTACACTTGAACAGCCACCAGCATCATTCGTTTCTGCAATGGAAGAGTATGTTAGAGATGCCCCAAGAGCATCATCAGTCCGTAGGGAGTCGAAGACTGAGTCTGTTCCAAAGGTTTTATCTCTGGAGTACAAGAAAAAATCAGAACCCCAGGATGATGCACCACCACCACCTCCTCCTCCACCTCCAGAACCAGTTAAAGAAAGTGCTGCACCTGTAGAAA

Fln Alignment:

Contig5626___ERLRTRELDTXXXXXXXXXXXXXXXRLMGCQPEGAAISNHVIQYALTAVSRESIKLYTAINDATINLVDKFFEMQRHDAIKALEIYRRAGKQAEKLSEFYEVCKGLDLGRGFKFPTLEQPPASFVSAMEEYVRDAPRASSVRRESKTESVPKVLSLEYKKKSEPQDDAXXXXXXXXXXXVKESAAPVE
B8LKD7_________________ERLRTRELDTVELLEQLPALQQYLYRLMGCQPEGAAISNHVIQYALTAVSRESIKLYTAINDATINLVDKFFEMQRHDAIKALDIYRRAGKQAEKLSEFYEVCKSLDLGRGFKFPTLEQPPASFISAMEEYVRDAPRASSARRE-LIESVPKTLALEYKKKSDPQDDAPPPPPPPPPEPVKESVAPVQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
127	14			85	0.993533
128	14		85		0.993533
131	85			14	0.993533
233		88		11	0.923564
236		88		11	0.923564
268	11		88		0.923564
273		87		12	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
509	521	CAC CAC CAC CAC C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain