SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5564

Length: 292 nt

UniGene Fasta

>biog3_v1.0_unigene5564
CTGGATGATTGACATTGATTATTATCTATCTCAGCAGATTCATCCTGTTGTGTCTAGATTATGTGCACCTATCCAAGGTACAAGCCCAGGACGTCTTGCAGATTGTCTTGGATTGGACTCATCGAAGTTTGAACCAAAAATGAGTTTTGAAGCTGTTGCGAAAGAGCCAGCTACTGCATTTCTCTCCAGTCTTCATGATGATGATGATGAAAGATACCATGACTGCGAACCATTCTTGATAGTATGCCCACATGTTCCTCAAGTTTTGAATGTCCTAGTGTCGCAAGCATAA

Ace file of the UniGene biog3_v1.0_unigene5564

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11374	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DNA polymerase n=1 Tax=Ricinus communis RepID=B9SC90_RICCO	-	-	65%
FL-Next	sp=DNA polymerase alpha catalytic subunit; Oryza sativa subsp. japonica (Rice).	-	-	63%
Blast2go	dna polymerase alpha catalytic	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	75%
Blast2go	Pyrimidine metabolism	00240	75%
Blast2go	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	75%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	75%
Blast2go	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	75%
Blast2go	lagging strand elongation	GO:0006273	Biological Process	75%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	75%
Blast2go	nucleoside binding	GO:0001882	Molecular Function	75%
Blast2go	DNA primase activity	GO:0003896	Molecular Function	75%
Blast2go	DNA binding	GO:0003677	Molecular Function	75%
Blast2go	3'-5' exonuclease activity	GO:0008408	Molecular Function	75%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed DNA polymerase, family B, pol2	IPR004578	-	-
Sma3	DNA-directed DNA polymerase, family B, exonuclease domain	IPR006133	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	Zinc finger, DNA-directed DNA polymerase, family B, alpha	IPR015088	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-
Sma3		IPR017966	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O48653

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 179 aas, your sequence is shorter than subject: 97 - 1534

Fln protein: WMIDIDYYLSQQIHPVVSRLCAPIQGTSPGRLADCLGLDSSKFEPKMSFEAVAKEPATAFLSSLHDDDDERYHDCEPFLIVCPHVPQVLNVLVSQA*

Protein Length: 98

Fln nts: CTGGATGATTGACATTGATTATTATCTATCTCAGCAGATTCATCCTGTTGTGTCTAGATTATGTGCACCTATCCAAGGTACAAGCCCAGGACGTCTTGCAGATTGTCTTGGATTGGACTCATCGAAGTTTGAACCAAAAATGAGTTTTGAAGCTGTTGCGAAAGAGCCAGCTACTGCATTTCTCTCCAGTCTTCATGATGATGATGATGAAAGATACCATGACTGCGAACCATTCTTGATAGTATGCCCACATGTTCCTCAAGTTTTGAATGTCCTAGTGTCGCAAGCATAA

Fln Alignment:

Contig5564___WMIDIDYYLSQQIHPVVSRLCAPIQGTSPGRLADCLGLDSSKFEPKMSFEAVAKEPATAFLSSLHDDDDERYHDCEPFLIVCP
O48653_________________WMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSSKFQSRLT--ESDNQDTSSMLLSVIDDEDERYRGCEPLRLSCP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
162	25		75		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
195	210	ATG ATG ATG ATG ATG A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain