SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5533

Length: 307 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene5533
GATCAACCACTTCCAGTTGAGCCTGTTATAGACAGCAGCAGATATTTTGTGCTTTGCGTTGAGGAGAACTTTGGTGGACATACAAGGCATGCTTTTATTGGACTAGGTTTTCGGGAGAGACCACAAGCATATGATTTTCAAGCTGCACTCTATGATCATGTCAAATATTTAAACAAGAAACAGGCCGCCGAGAAAATGGAGCAGCAGTACCAAACAAGATCATCTGTTGACTACAGTCTGAAGGAGGGTCAGACTTTAAAACTACAGTTGAAAAATCCATACGGAAGAGATGGCACCAAGAGGTCTA

Ace file of the UniGene biog3_v1.0_unigene5533 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26396	1/2
SustainPine v2.0	sp_v2.0_unigene28829	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Adaptin ear-binding coat-associated protein 1 n=2 Tax=Andropogoneae RepID=B4FRD1_MAIZE	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	protein	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Adaptin ear-binding coat-associated protein 1 NECAP-1	IPR012466	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWQ6

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 102 - 283

Fln protein: DQPLPVEPVIDSSRYFVLCVEENFGGHTRHAFIGLGFRERPQAYDFQAALYDHVKYLNKKQAAEKMEQQYQTRSSVDYSLKEGQTLKLQLKNPYGRDGTKRS

Protein Length: 103

Fln nts: GATCAACCACTTCCAGTTGAGCCTGTTATAGACAGCAGCAGATATTTTGTGCTTTGCGTTGAGGAGAACTTTGGTGGACATACAAGGCATGCTTTTATTGGACTAGGTTTTCGGGAGAGACCACAAGCATATGATTTTCAAGCTGCACTCTATGATCATGTCAAATATTTAAACAAGAAACAGGCCGCCGAGAAAATGGAGCAGCAGTACCAAACAAGATCATCTGTTGACTACAGTCTGAAGGAGGGTCAGACTTTAAAACTACAGTTGAAAAATCCATACGGAAGAGATGGCACCAAGAGGTCTA

Fln Alignment:

Contig5533___VEPVIDSSRYFVLCVEENFGGHTRHAFIGLGFRERPQAYDFQAALYDHVKYLNKKQAAEKMEQ----QYQTRSSVDYSLKEGQTLKLQLKN
A9NWQ6_________________VETVADSSRYFVLKIED---GRGKHAFIGLGFAERNEAFDFNVALSDHEKYIRREQEKEKGEENEDGKIEIHPAVNQRLKEGETIRINVKN

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
58	33		66		0.997452
60		66		33	0.997452
61		66	33		0.997452
62		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain