SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5511

Length: 389 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene5511
CGTTTGAGCGCATGTCTCAGCTGGGTCATGGGCCAAGGCTGCTGGGTCGATTCCCAAATGGTCGTCTCGAGGAGTTTCTTGATGCTCGGACACTTTCAGCAAAAGATTTACGTGATCCGGACATATCTCAAAAGATTGCTATCAAATTGAATGAATTCCATCATTTAGACATTCCTGGATCATCTCATCCACAAATATGGGAGCGCTTGAGGGATTGGCTGGAGAAGTCAAATAAACTGTGTAAACCAGAAATAATTCAGGAGTTCCAACTGGAGAGACTACAGAAAGAGATATCAAATCTAAGTAATTCTATCTCAAAGCCCAACGAGCGAGTTGGATTTTGTCATAATGACTTGCAATATGGAAATATCATGATTAATGAAAACATT

Ace file of the UniGene biog3_v1.0_unigene5511 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12462	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase domain-containing protein [Arabidopsis thaliana] gb\|AAM19803.1\| At1g74320/F1O17_1 [Arabidopsis thaliana] gb\|AAM98234.1\| putative choline kinase [Arabidopsis thaliana] gb\|AAP42750.1\| At1g74320 [Arabidopsis thaliana] gb\|AEE35577.1\| protein ki	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	choline ethanolamine kinase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	0.0	72%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	72%
Blast2go	Lipopolysaccharide biosynthesis	00540	72%
Blast2go	Nicotinate and nicotinamide metabolism	00760	72%
Blast2go	Metabolic pathways	01100	72%

Source	GOs	Term	Type	Identity
Blast2go	cellular biosynthetic process	GO:0044249	Biological Process	72%
Blast2go	cellular nitrogen compound metabolic process	GO:0034641	Biological Process	72%
Blast2go	primary metabolic process	GO:0044238	Biological Process	72%
Blast2go	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	72%
Blast2go	kinase activity	GO:0016301	Molecular Function	72%

Source	InterPros	Term	Type	Identity
Sma3	Choline/ethanolamine kinase	IPR002573	-	-
Sma3	Aminoglycoside phosphotransferase	IPR002575	-	-
Sma3	Choline kinase, N-terminal	IPR007521	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLC2

Fln msg: Distance to subject end: 125 aas, your sequence is shorter than subject: 129 - 351

Fln protein: FERMSQLGHGPRLLGRFPNGRLEEFLDARTLSAKDLRDPDISQKIAIKLNEFHHLDIPGSSHPQIWERLRDWLEKSNKLCKPEIIQEFQLERLQKEISNLSNSISKPNERVGFCHNDLQYGNIMINENI

Protein Length: 130

Fln nts: CGTTTGAGCGCATGTCTCAGCTGGGTCATGGGCCAAGGCTGCTGGGTCGATTCCCAAATGGTCGTCTCGAGGAGTTTCTTGATGCTCGGACACTTTCAGCAAAAGATTTACGTGATCCGGACATATCTCAAAAGATTGCTATCAAATTGAATGAATTCCATCATTTAGACATTCCTGGATCATCTCATCCACAAATATGGGAGCGCTTGAGGGATTGGCTGGAGAAGTCAAATAAACTGTGTAAACCAGAAATAATTCAGGAGTTCCAACTGGAGAGACTACAGAAAGAGATATCAAATCTAAGTAATTCTATCTCAAAGCCCAACGAGCGAGTTGGATTTTGTCATAATGACTTGCAATATGGAAATATCATGATTAATGAAAACATT

Fln Alignment:

Contig5511___FERMSQLGHGPRLLGRFPNGRLEEFLDARTLSAKDLRDPDISQKIAIKLNEFHHLDIPGSSHPQIWERLRDWLEKSNKLCKPEIIQEFQLERLQKEISNLSNSISKPNERVGFCHNDLQYGNIMINE
B8LLC2_________________FECMSRLGQGPRLLGRFPEGRIEEFLNARTLSAPDLRCPEISAQIAAKLREFHQLDVPGPRKPKLWTRLRDWVKTALAVCPKIEAAEFQLDCMEEEVDNLEKLLSREDETIGFCHNDLQYGNIMLHE

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
101	33			66	0.997452
102	33	66			0.997452
104			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain