SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5495

Length: 335 nt

UniGene Fasta

>biog3_v1.0_unigene5495
AATGTATCTATTTTACAAAGTGCTAGACTGAATGTTGAACAACTGGCTATGGCAAATATGCTAGCTAAAAGTAGCAGCCTTCTCTCAACTCTCATAAATGACATAATGGATTTTTCAGAATTGGAGGATACTTCTTTGGTTCTTCAGTTACACCCCTTCCAGCTACATGGTATGCTGAAAGATGCAGCACACCTCACAGAGACCATGTCTAGAAGCAAGGGTCTTCTATTAAATATTGAAATAGGTGATGGGATGCCTGACCATGTGATAGGAGATGAAAAACGAATTCTACGGATTATTTTACATATGGTTGGAAATGCAATCAATTCAACATT

Ace file of the UniGene biog3_v1.0_unigene5495

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2142	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Ethylene receptor homolog n=2 Tax=Physcomitrella patens RepID=A9CPF1_9BRYO	-	-	52%
FL-Next	sp=Ethylene receptor 2; Pelargonium hortorum (Common geranium).	-	-	42%
Blast2go	ethylene receptor	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	66%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	66%
Blast2go	transferase activity, transferring phosphorus-containing groups	GO:0016772	Molecular Function	66%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	66%

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase-related protein, C-terminal	IPR004358	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-
Sma3	Tachykinin/Neurokinin-like, conserved site	IPR013055	-	-
Sma3	Signal transduction histidine kinase, hybrid-type, ethylene sensor	IPR014525	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9XH57

Fln msg: Distance to subject end: 265 aas, your sequence is shorter than subject: 111 - 741

Fln protein: NVSILQSARLNVEQLAMANMLAKSSSLLSTLINDIMDFSELEDTSLVLQLHPFQLHGMLKDAAHLTETMSRSKGLLLNIEIGDGMPDHVIGDEKRILRIILHMVGNAINST

Protein Length: 112

Fln nts: AATGTATCTATTTTACAAAGTGCTAGACTGAATGTTGAACAACTGGCTATGGCAAATATGCTAGCTAAAAGTAGCAGCCTTCTCTCAACTCTCATAAATGACATAATGGATTTTTCAGAATTGGAGGATACTTCTTTGGTTCTTCAGTTACACCCCTTCCAGCTACATGGTATGCTGAAAGATGCAGCACACCTCACAGAGACCATGTCTAGAAGCAAGGGTCTTCTATTAAATATTGAAATAGGTGATGGGATGCCTGACCATGTGATAGGAGATGAAAAACGAATTCTACGGATTATTTTACATATGGTTGGAAATGCAATCAATTCAACATT

Fln Alignment:

Contig5495___SILQSARLNVEQLAMANMLAKSSSLLSTLINDIMDFSELEDTSLVLQLHPFQLHGMLKDAAHLTETMSRSKGLLLNIEIGDGMPDHVIGDEKRILRIILHMVGNAI
Q9XH57_________________SLLQETELTPEQRLMVETVLKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHALLREVHNLIKPIASVKKLCISLNVATDLPEYAVGDEKRLVQIILNVVGNAV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
156	25	75			0.996473
157	25			75	0.996473
159		75	25		0.996473
160		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain