SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5433

Length: 424 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene5433
GGGAAAGTATTATTAATTGAAGATGGTATTCCTAGGTGCTTTGTCAAGGAGCGTGTAGAAGTACCTTTTGAACCTGTTGTAAGAGCTCCAGATATTTCTTATGGCTGTGGATAACTCTGGCGCTAGTAGGATTTCATATGTATAGAAAATGTATAGTTCCAGTTGATTATTATTGAGATGTCTATGGAATTTTAGTTAGATTAGGAAACACCTACTGCCATGATCACAAAAGGGAACTTTGTGCCTTGCTACTCTATTTAGAATCCAGAATTTTCCAACTTAGCTACCTAGTTTTTATTTGGTGTATTGCCAAAGATGACTGCACTGGAAGTATACTTTTTCCATTACAACTGTATTGCATACTTCTTTCCATTACAACTTTATTGCTTATTTTGATTGGGATCAATTGTAGCCATGAACTATG

Ace file of the UniGene biog3_v1.0_unigene5433 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2560	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	55%

Source	GOs	Term	Type	Identity
Blast2go	plastid fission	GO:0043572	Biological Process	55%
Blast2go	protein binding	GO:0005515	Molecular Function	55%
Blast2go	integral to chloroplast outer membrane	GO:0031359	Cellular Component	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADQ6

Fln msg: your sequence is shorter than subject: 38 - 325

Fln protein: GKVLLIEDGIPRCFVKERVEVPFEPVVRAPDISYGCG*

Protein Length: 39

Fln nts: GGGAAAGTATTATTAATTGAAGATGGTATTCCTAGGTGCTTTGTCAAGGAGCGTGTAGAAGTACCTTTTGAACCTGTTGTAAGAGCTCCAGATATTTCTTATGGCTGTGGATAA___CTCTGGCGCTAGTAGGATTTCATATGTATAGAAAATGTATAGTTCCAGTTGATTATTATTGAGATGTCTATGGAATTTTAGTTAGATTAGGAAACACCTACTGCCATGATCACAAAAGGGAACTTTGTGCCTTGCTACTCTATTTAGAATCCAGAATTTTCCAACTTAGCTACCTAGTTTTTATTTGGTGTATTGCCAAAGATGACTGCACTGGAAGTATACTTTTTCCATTACAACTGTATTGCATACTTCTTTCCATTACAACTTTATTGCTTATTTTGATTGGGATCAATTGTAGCCATGAACTATG

Fln Alignment:

Contig5433___GKVLLIEDGIPRCXXXXXXXXXXXXXXRAPDISYGCG
D5ADQ6_________________GKVLLIEDGIPRCFVKERVEVPFEPVVKAPDISYGCG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain