SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5422

Length: 1816 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5422 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3269	151/151

Source	Descriptions	Term	Type	Identity
AutoFact	Hydroxymethylglutaryl-CoA lyase, mitochondrial n=4 Tax=Arabidopsis RepID=HMGCL_ARATH	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	hydroxymethylglutaryl- lyase	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydroxymethylglutaryl-CoA lyase.	EC:4.1.3.4	-	0.0	79%

Source	KEGGs	Term	Identity
Blast2go	Synthesis and degradation of ketone bodies	00072	79%
Blast2go	Valine, leucine and isoleucine degradation	00280	79%
Blast2go	Geraniol degradation	00281	79%
Blast2go	Butanoate metabolism	00650	79%
Blast2go	Metabolic pathways	01100	79%
Blast2go	Biosynthesis of secondary metabolites	01110	79%

Source	GOs	Term	Type	Identity
Blast2go	leucine metabolic process	GO:0006551	Biological Process	79%
Blast2go	hydroxymethylglutaryl-CoA lyase activity	GO:0004419	Molecular Function	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-
Sma3	Pyruvate carboxyltransferase	IPR000891	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMI6

Fln msg:

Fln protein: MLTLKTLSRLVQQRPSFSWARIRAPQLIPSFRMSSLEEPVRTDSFSKLNGTGRLSRLSSDSSRKRFDERSSAQDLAGEGDCSCSPMDVNEYVVGSVSWRKEIHDRNGIGSSCMRPLSCCRSYQLLSSGKREIWTLPERHYSSLREETEIRQLTQKLLRGTPKFVKIVEVGPRDGLQNEKNIVPANVKIELIKRLAASGLQVVEATSFVSPKWVPQLADAKEVMDGIKSVAGTRLPVLTPNLKGFHAAIDAGAKEVAVFASASESFSKSNINCTIEESLGRYKEILNAAKRFSVPVRGYVSCVVGCPVEGPISPSSVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLDAVMSVVPVEKLAVHFHDTYGQSLANIFVSLQMGISVIDSSISGLGGCPYAKGATGNVATEDVVYLLNGLGVKTNVDLGKLLSAADFICKHLGRQSGSKAGIALSRGIRDHSKM*

Protein Length: 465

Fln nts: AATGTTTAAATTCCACTGCATTTCGATATCTCTGGAGATCAGGGCAGTCAGCGATTTAGGGATGCAAATAGAGTCAGGACAGGCATAGCGGACACTACGTCCATTGGCATTTTTAAGCTATAACTACTTCTAGGTTTCAAGAAACGG_-_ATGCTTACATTGAAGACCTTGTCCAGATTAGTCCAGCAGAGGCCATCCTTTTCGTGGGCAAGAATCCGAGCTCCACAGTTGATCCCCAGCTTCAGGATGTCCAGTTTGGAGGAGCCTGTCCGAACTGACAGCTTCTCAAAGTTGAATGGCACGGGAAGGTTATCTCGATTATCATCTGACAGTAGTAGGAAGAGATTTGATGAAAGAAGTTCCGCACAAGACTTGGCTGGAGAGGGGGATTGCAGTTGTTCTCCCATGGATGTCAATGAGTATGTTGTGGGATCGGTGTCATGGAGGAAAGAAATACATGACAGGAATGGTATTGGTTCATCTTGCATGAGGCCCTTATCATGCTGTAGAAGTTACCAATTGTTGTCAAGTGGCAAGCGTGAAATTTGGACATTACCAGAGCGCCATTATAGTTCATTACGTGAAGAAACAGAAATAAGGCAACTTACTCAAAAGCTTTTAAGGGGTACACCCAAGTTTGTAAAGATAGTTGAAGTTGGACCAAGAGATGGATTGCAGAATGAGAAGAACATAGTACCAGCAAATGTAAAGATTGAGCTGATCAAAAGGTTGGCTGCCTCTGGCCTGCAAGTTGTAGAGGCTACCAGCTTTGTTTCACCAAAATGGGTTCCACAGTTGGCAGATGCAAAGGAGGTTATGGATGGTATCAAATCAGTGGCTGGTACACGGCTTCCTGTGTTGACGCCAAATTTGAAGGGTTTTCATGCTGCTATTGATGCTGGGGCAAAGGAAGTTGCTGTGTTTGCCTCTGCCTCAGAGTCTTTCTCAAAATCAAACATCAATTGTACTATTGAAGAGAGTTTAGGTCGTTATAAAGAGATCTTGAATGCTGCAAAAAGATTCTCTGTACCTGTACGGGGGTATGTGTCTTGTGTTGTCGGATGTCCTGTTGAAGGCCCCATATCTCCATCCAGCGTAGCATATGTTGCAAAGGAGCTTTATGATATGGGATGCTATGAAATCTCTCTTGGTGACACCATAGGTGTCGGTACTCCAGGCACTGTTGTTCCGATGCTTGATGCTGTAATGAGTGTTGTACCTGTTGAAAAGCTTGCTGTTCATTTCCATGATACTTATGGACAATCACTTGCAAATATTTTTGTTTCGTTACAGATGGGAATTAGTGTCATTGACTCATCAATATCTGGGCTTGGAGGGTGTCCATATGCCAAAGGTGCTACTGGCAATGTAGCAACTGAAGATGTTGTCTATTTACTTAATGGTCTTGGTGTGAAGACAAATGTTGACCTCGGTAAACTGCTTTCAGCAGCCGATTTCATTTGCAAACATTTGGGCCGCCAATCTGGATCAAAAGCAGGAATAGCACTAAGCAGAGGCATAAGAGATCACTCAAAGATGTGA___TATCTAACATGACTTGCAATTTCAACTTTCAAGTGAAGGGGATGTTGTATCTTCAGAGCTTTGTCCAAATGCCTTTGATTAATTATTACTTTCCTCTTAAAATAAAAGTTTACACAGCATGCTTTTCATGAAAAGACATGCTTGCAATAATCTCTATTCAAGGGCACAGGTGTTTTAGAGCATATTTGGATGGCTGCCTGTCGCCATTGTTAAATATAAGCATCACCAGAGTTCTATATCTTTATCTTATTGTCTGGTTCCCTGAGATTTTAACATT

Fln Alignment:

Contig5422___MLTLKTLSRLVQQRPSFSWARIRAPQLIPSFRMSSLEEPVRTDSFSKLNGTGXXXXXXXXXXXXRFDERSSAQDLAGEGDCSCSPMDVNEYVVGSVSWRKEIHDRNGIGSSCMRPLSCCRSYQLLSSGKREIWTLPERHYSSLREETEIRQLTQKLLRGTPKFVKIVEVGPRDGLQNEKNIVPANVKIELIKRLAASGLQVVEATSFVSPKWVPQLADAKEVMDGIKSVAGTRLPVLTPNLKGFHAAIDAGXXXXXXXXXXXXXXXXSNINCTIEESLGRYKEILNAAKRFSVPVRGYVSCVVGCPVEGPISPSSVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLDAVMSVVPVEKLAVHFHDTYGQSLANIFVSLQMGISVIDSSISGLGGCPYAKGATGNVATEDVVYLLNGLGVKTNVDLGKLLSAADFICKHLGRQSGSKAGIALSRGIRDHSKM
B8LMI6_________________MLTFKTLSRLVQQRPSLLWARIPAPQLIPSFRMSSLEEPVRFDSFSKLNGTGRLSRLSSDDSRKRFDERNSAQDLAGERECSCSPMDVEEYVVGSVSWRKEVHDRNGIGSSCMRPLSCCRSYRLLPSGKREIWTLPERHYSSLREETEIRQLTQKLLRGTPMFVKLVEVGPRDGLQNEKNTVPTNVKIELIKRLAASGLQVVEATSFVSPKWVPQLADAKDVMDGIKSVAGTRLPVLTPNLKGFHAAIDAGAKEVAVFASASESFSKSNINCTIEESLCRYKDILNAAKRLCVPVRGYVSCVVGCPVEGPISPSSVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLDAVMSVVPVEKLAVHFHDTYGQSLANILVSLQMGISIIDSSISGLGGCPYAKGATGNVATEDVVYLLNGLGVKTNVDLGKLLSAADFICKHLGRQSGSKAGIALSRGTRDHSKM

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1673	14			85	0.993533
1674	14			85	0.993533
1676		85	14		0.993533
1678	14			85	0.993533
1679		14	85		0.993533
1681	85			14	0.993533
1682	85			14	0.993533
1761	50	50			1.0
1764		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain