SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5403

Length: 1250 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5403

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9035	27/29
SustainPine v2.0	sp_v2.0_unigene61680	2/29

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CRAL_TRIO multi-domain protein	-	-	2.0e-22	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	sec14 cytosolic factor family protein	-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	76%
Blast2go	transporter activity	GO:0005215	Molecular Function	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%
Blast2go	plastid	GO:0009536	Cellular Component	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Cellular retinaldehyde binding/alpha-tocopherol transport	IPR001071	-	-
Sma3	CRAL-TRIO domain	IPR001251	-	-
Sma3		IPR008273	-	-
Sma3	GOLD	IPR009038	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQX3

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 416 - 592

Fln protein: EKKALQDLKLRIEAAIKSNELMLEGPGANGDHNAAAVGNNGVKDDRPTKPNPDQNGSGNEKPAAEVLQSCNDNVTIWGIPLLHTKNDERTDVILLKFLRARDFRVNDAFVMLQNSVAWRKAFGADSIVEEDLKFDENLNSVAFMHCYDKVGHPVCYNAYGIFRNKELYQKIFGDDEKLKKFLRWRVQILEKGIKLLDFKPGGVNAMIQITDLKNMPKRQLRAASNQILALFQDNYPEMVARKVFINVPWYFSALYSMLSPFLTQRTKSKFVIAREGKVTETLYKFISPENVPIQYGGLSRTKDVDFGPHKPAVEFSIRAGEKINLEIEGVEAGATILWDLIVGGWDVTYRSEFVPSAEGSYSTLIDKNRKLSSSDEPICNSFKASEAGKVVLIIDNSSSNKKKAAAYRYMVKKNIH

Protein Length: 417

Fln nts: AGAGAAGAAGGCCTTGCAAGACTTAAAATTGAGGATTGAGGCTGCCATTAAATCGAATGAGTTAATGTTGGAAGGACCTGGTGCTAATGGTGATCATAATGCTGCAGCAGTAGGCAATAATGGAGTGAAGGACGACAGACCCACCAAGCCAAACCCTGATCAGAATGGCAGTGGGAATGAAAAACCTGCTGCAGAGGTTTTACAGAGCTGCAATGATAATGTTACTATTTGGGGGATTCCACTGCTTCACACAAAGAATGATGAGAGGACTGATGTTATACTTCTAAAATTTCTTCGTGCCAGAGATTTCAGGGTGAATGACGCATTCGTCATGTTGCAGAATAGTGTGGCATGGAGGAAGGCATTTGGAGCTGACAGTATAGTTGAAGAGGATCTGAAATTTGATGAGAATCTGAATTCAGTGGCCTTCATGCACTGTTATGATAAAGTGGGCCATCCTGTGTGCTACAATGCTTATGGGATTTTTCGAAATAAGGAGCTCTACCAGAAGATCTTTGGAGATGATGAGAAGCTGAAGAAGTTTCTGAGATGGAGGGTCCAAATTCTGGAGAAGGGCATCAAGCTCCTTGACTTCAAGCCTGGTGGTGTCAATGCCATGATTCAGATCACAGATCTTAAGAATATGCCCAAGAGACAATTGAGAGCTGCATCAAACCAAATTCTTGCACTTTTTCAAGATAACTATCCGGAGATGGTAGCAAGAAAGGTATTCATCAATGTCCCATGGTATTTCAGTGCACTGTACTCCATGTTGAGCCCTTTCCTGACACAGCGTACCAAGAGCAAATTTGTCATTGCACGTGAAGGAAAAGTTACAGAGACCTTGTACAAATTTATATCTCCAGAGAATGTGCCTATACAGTATGGGGGACTAAGCAGGACCAAAGATGTAGATTTTGGACCTCACAAGCCTGCAGTAGAGTTCTCCATTAGAGCTGGGGAGAAAATCAATCTTGAGATCGAGGGAGTGGAGGCGGGAGCAACAATTCTCTGGGACCTCATAGTTGGTGGGTGGGATGTTACCTATCGGTCAGAGTTTGTCCCGAGTGCAGAGGGAAGCTATTCCACTCTTATTGACAAGAACAGAAAATTGTCTTCATCTGATGAACCAATTTGCAATTCCTTCAAGGCATCAGAGGCAGGGAAGGTAGTTCTGATAATAGACAACTCCTCTTCAAACAAGAAAAAGGCTGCAGCCTATAGATACATGGTAAAAAAGAACATACATT

Fln Alignment:

Contig5403___EKKALQDLKLRIEAAI-------KSNELMLEGPGANGDHNAAAVGNNGVKDDRPTKPNPDQNGSGNEKPAAEVLQSCNDNVTIWGIPLLHTKNDERTDVILLKFLRARDFRVNDAFVMLQNSVAWRKAFGADSIVEEDLKFDENLNSVAFMHCYDKVGHPVCYNAYGIFRNKELYQKIFGDDEKLKKFLRWRVQILEKGIKLLDFKPGGVNAMIQITDLKNMP---KRQLRAASNQILALFQDNYPEMVARKVFINVPWYFSALYSMLSPFLTQRTKSKFVIAREGKVTETLYKFISPENVPIQYGGLSRTKDVDF-GPHKPAVEFSIRAGEKINLEIEGVEAGATILWDLIVGGWDVTYRSEFVPSAEGSYSTLIDKNRKLSSSDEPICNSFKASEAGKVVLIIDNSSSNKKKAAAYRYMVKKNI
B8LQX3_________________DKKAVEEQGPKAEESVAVETVTVSSDTLEVSASGAENASEATAVESEAVTGEQETVEVTVETFE------AETEKFRATDVYLWGVPLLHTKGDERTDVILLKFLRARDFKVQEAFEMLKNTVLWRKSFKTDSILEED--FGNDLDGVAYMNGYDKEGHPVCYNVYGVFQDKELYQKTFGTEEKRQRFLRWRVQLLEKGIEQLSFSPGGVNSMVQITDLKNSPGPGKKELRQATKQALDLLQDNYPEFVARKIFINVPWWYLALSTMISPFITQRTKSKFVIARASRVTETLFKYISPEYVPVQYGGLNRENDQEFSGADGGVTELIIKAGTKQIIDIPATEVGTSLVWDLTVVGWEVSYKEEFIPSAEGCYTVIIQKEKKMAAQEEAVRNSFKIGEVGKVVLTIDNLSSRKKK-LIYRSKVKRHL

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
452	25		75		0.996473
453		25	75		0.996473
454	25		75		0.996473
455		75		25	0.996473
456		75		25	0.996473
545	20			80	0.995493
546	20	80			0.995493
586	20	80			0.995493
589	20	80			0.995493
658		33	66		0.997452
660	66			33	0.997452
796	16		83		0.994512
797		83		16	0.994512
859	14			85	0.993533
862	85		14		0.993533
1058	12		87		0.992554
1059			87	12	0.992554
1145	12		87		0.992554
1241		33	66		0.997452
1242	33		66		0.997452
1244	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain