SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5359

Length: 1584 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5359 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13874	27/52
SustainPine v2.0	sp_v2.0_unigene16469	1/52
SustainPine v2.0	sp_v2.0_unigene16788	19/52
SustainPine v2.0	sp_v2.0_unigene23259	4/52

Source	Descriptions	Term	Type	Identity
AutoFact	Pseudotzain n=3 Tax=Pinaceae RepID=Q40922_PSEMZ	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	cysteine proteinase rd21a	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	85%
Blast2go	proteolysis	GO:0006508	Biological Process	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	85%
Blast2go	vacuole	GO:0005773	Cellular Component	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%
Blast2go	apoplast	GO:0048046	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	-
Sma3	Granulin	IPR000118	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Ribosomal protein L5	IPR002132	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3		IPR018069	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV34

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 402 - 452

Fln protein: PTMVLTRM*KRFTVFKDNFLYIHEHNQGNRSYKLGLNKFADLSHEEFKATYLGAKLDTKKRLLRSPSPRYQYSDGEDLPKSIDWREKGAVAPVKDQGACGSCWAFSTVAAVEGINQIVTGDLISLSEQELVDCDTSYNQGCNGGLMDYAFEFIINNGGLDSEEDYPYTAYDGSCDAYRKNAHVVTIDDYEDVPENDEKSLKKAAANQPISVAIEASGREFQFYESGVFTSACGTQLDHGVTLVGYGAESGTDYWIVKNSWGKSWGEEGFIRLQRNLEEASTGICGIAMEASYPVKKGANPPNPGPSPPSPIKPPTVCDNYYSCPQSNTCCCMYDFGGYCYAWGCCPLDSATCCDDHYSCCPSEYPVCDLDGGTCLKSSKDPFGVKMLKRTPAKPYWAAAAA*

Protein Length: 403

Fln nts: CCTACAATGGTCTTGACGAGAATGTAGAAGAGGTTCACTGTATTCAAAGACAATTTTCTGTATATTCACGAGCACAACCAGGGGAATCGGTCCTACAAACTGGGTCTGAACAAGTTTGCAGATCTGAGCCACGAGGAATTCAAGGCCACATATCTGGGTGCCAAGCTGGATACCAAGAAACGCTTGCTGAGGTCTCCCAGCCCTCGATACCAGTATTCCGACGGCGAGGATTTGCCAAAGTCCATTGACTGGAGAGAAAAGGGAGCCGTGGCTCCCGTGAAGGACCAGGGTGCATGTGGAAGTTGTTGGGCGTTCTCAACTGTGGCGGCCGTTGAAGGAATCAATCAAATCGTGACCGGCGATTTGATTTCGCTGTCCGAGCAAGAGCTGGTGGACTGTGATACTTCTTACAACCAAGGATGCAACGGTGGCCTCATGGATTACGCTTTTGAGTTTATCATAAACAATGGTGGACTTGACAGCGAGGAGGATTACCCCTACACGGCCTACGATGGATCATGTGACGCTTACAGGAAAAATGCCCATGTGGTGACAATCGATGACTACGAAGATGTGCCTGAAAACGATGAGAAATCGTTGAAGAAGGCTGCCGCTAATCAGCCAATTAGCGTTGCCATCGAAGCCAGCGGGAGGGAGTTCCAGTTTTACGAATCTGGTGTGTTCACTAGCGCCTGCGGAACCCAGCTAGACCACGGCGTGACTCTGGTGGGCTATGGGGCAGAGTCGGGCACAGACTACTGGATTGTTAAGAATTCTTGGGGAAAGAGCTGGGGAGAGGAGGGATTCATCAGACTGCAGAGGAACCTTGAAGAAGCTTCAACAGGTATTTGTGGTATAGCAATGGAGGCATCTTACCCTGTAAAGAAGGGTGCCAACCCTCCAAACCCTGGGCCTTCTCCCCCAAGCCCAATAAAGCCTCCCACTGTGTGTGACAACTATTATTCCTGCCCTCAGAGCAACACCTGCTGCTGCATGTATGACTTCGGAGGTTACTGCTATGCCTGGGGTTGCTGCCCTCTTGATTCGGCCACCTGCTGTGATGATCACTACAGCTGCTGCCCTAGCGAGTACCCAGTCTGTGATCTTGATGGTGGGACCTGCCTCAAGAGTAGCAAGGATCCATTTGGAGTGAAGATGCTGAAGCGTACCCCAGCCAAACCCTACTGGGCTGCTGCTGCCGCCTGA___ATAGTCGCTGATGGTCTTTTGCAAACCTGATCGTCCAAGGAGAAACTTATACATAAAAAAAGGGTTTGTGTACAAAATACTTCTGCTATGTTGCCGTGTCTGGCTTGGCTTCTCCAGTTGGATCAGAAACTGCTCCTGTCCTGTCATCAATTCTCTCCCTTCTCATTTATACATGTACAGCGCTTGGTTATGTTAGCCATTGTTATTATTTGTTCTGAGGCTTATAGTCTATGAACAAAACAGCTTTTATGATTACGGAAAGCTATTATAGATCTTAACTCCAGGAGTTAGGTAATGTTCCATATTTTTCAATTGTTATTGTTATTTCAGGTCAGTAAGATTAGTTCCCAACCTGGGTGCAAAAGGTTCAGGTGTAAT

Fln Alignment:

Contig5359___KRFTVFKDNFLYIHEHNQGNRSYKLGLNKFADLSHEEFKATYLGAKLDTKKRLLRSPSPRYQYSDGEDLPKSIDWREKGAVAPVKDQGACGSCWAFSTVAAVEGINQIVTGDLISLSEQELVDCDTSYNQGCNGGLMDYAFEFIINNGGLDSEEDYPYTAYDGSCDAYRKNAHVVTIDDYEDVPENDEKSLKKAAANQPISVAIEASGREFQFYESGVFTSACGTQLDHGVTLVGYGAESGTDYWIVKNSWGKSWGEEGFIRLQRNLEEASTGICGIAMEASYXXXXXXXXXXXXXXXXXXXXXPTVCDNYYSCPQSNTCCCMYDFGGYCYAWGCCPLDSATCCDDHYSCCPSEYPVCDLDGGTCLKSSKDPFGVKMLKRTPAKPYW
A9NV34_________________KRFSVFKDNFLYIHEHNQGNRSYKLGLNQFADLSHEEFKATYLGAKLDTKKRLSRPPSRRYQYSDGEDLPESIDWREKGAVTSVKDQGSCGSCWAFSTVAAVEGINQIVTGDLISLSEQELVDCDTSYNQGCNGGLMDYAFEFIINNGGLDSEEDYPYTAYDGSCDSYRKNAHVVTIDDYEDVPENDEKSLKKAAANQPISVAIEASGREFQFYDSGVFTSTCGTQLDHGVTLVGYGSESGTDYWTVKNSWGKSWGEEGFIRLQRNIEVASTGMCGIAMEASYPVKKGANPPNPGPSPPSPIKPPTVCDNYYSCPESNTCCCMYDFGGYCYAWGCCPLDSATCCDDHYSCCPNEYPVCDLDGGTCLKSSKDPFGVKMLKRTPAKPYW

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
75	25			75	0.996473
79			75	25	0.996473
292	20			80	0.995493
293	80			20	0.995493
295		80		20	0.995493
442	88			11	0.923564
740	87		12		0.992554
741		87		12	0.992554
789	12			87	0.992554
790		87		12	0.992554
841	90	10			0.90298
846			88	11	0.923564
856	12	87			0.992554
857		87		12	0.992554
858	87			12	0.992554
909	12	87			0.992554
910		87		12	0.992554
911	87		12		0.992554
912			87	12	0.992554
1021		20		80	0.995493
1023			80	20	0.995493
1237	10		90		0.90298
1238	90			10	0.90298
1240			10	90	0.90298
1299	11	88			0.923564
1300		88		11	0.923564
1451	10			90	0.90298
1453	10	90			0.90298
1530			83	16	0.994512
1531	83			16	0.994512
1540	20			80	0.995493
1554	25		75		0.996473
1555	75	25			0.996473
1557		75		25	0.996473
1558		75		25	0.996473
1565	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain