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UniGene Name: biog3_v1.0_unigene5148
Length: 227 nt
 UniGene Fasta
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| >biog3_v1.0_unigene5148
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Ace file of the UniGene biog3_v1.0_unigene5148
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If you push the Download ace button, you will download an ace file of this UniGene.
To watch this ACE file you will need an ACE viewer program as Tablet:
Go to the Tablet ACE viewer Web
| Annotations |
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| Parent Assembly | Parent UniGene | Reads (related/total) |
|---|---|---|
| SustainPine v2.0 | sp_v2.0_unigene8398 | 4/4 |
| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | ABC transporter C family member 2 [Arabidopsis thaliana] ref|NP_001189675.1| ABC transporter C family member 2 [Arabidopsis thaliana] sp|Q42093.2|AB2C_ARATH RecName: Full=ABC transporter C family member 2; Short=ABC transporter ABCC.2; Short=AtABCC2; AltN | - | - | 0.0 | 59% |
| Blast2go | abc transporter c family member 2 | - | - | 0.0 | 84% |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Blast2go | Xenobiotic-transporting ATPase. | EC:3.6.3.44 | - | 0.0 | 84% |
| Blast2go | 2-alkenal reductase. | EC:1.3.1.74 | - | 0.0 | 84% |
| Blast2go | Arsenite-transporting ATPase. | EC:3.6.3.16 | - | 0.0 | 84% |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Blast2go | arsenite transport | GO:0015700 | Biological Process | 0.0 | 84% |
| Blast2go | oxidation-reduction process | GO:0055114 | Biological Process | 0.0 | 84% |
| Blast2go | ATP catabolic process | GO:0006200 | Biological Process | 0.0 | 84% |
| Blast2go | response to arsenic-containing substance | GO:0046685 | Biological Process | 0.0 | 84% |
| Blast2go | xenobiotic-transporting ATPase activity | GO:0008559 | Molecular Function | 0.0 | 84% |
| Blast2go | 2-alkenal reductase [NAD(P)] activity | GO:0032440 | Molecular Function | 0.0 | 84% |
| Blast2go | ATP binding | GO:0005524 | Molecular Function | 0.0 | 84% |
| Blast2go | protein binding | GO:0005515 | Molecular Function | 0.0 | 84% |
| Blast2go | arsenite-transmembrane transporting ATPase activity | GO:0015446 | Molecular Function | 0.0 | 84% |
| Blast2go | integral to membrane | GO:0016021 | Cellular Component | 0.0 | 84% |
| Blast2go | plant-type vacuole | GO:0000325 | Cellular Component | 0.0 | 84% |
| Blast2go | vacuolar membrane | GO:0005774 | Cellular Component | 0.0 | 84% |
| Blast2go | phytochelatin transmembrane transporter activity | GO:0071992 | Biological Process | 0.0 | 84% |
| Blast2go | phytochelatin transmembrane transport | GO:0071994 | Biological Process | 0.0 | 84% |
| Full-Lengther Next Prediction |
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Fln status: unknown
Fln database: testcode
Fln msg: Non coding ORF found >= 200 nt
Test code: 0
Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.
| SNPs (tot: 3) |
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| Position | A % | C % | G % | T % | Probability |
|---|---|---|---|---|---|
| 97 | 20 | 80 | 0.995493 | ||
| 201 | 66 | 33 | 0.997452 | ||
| 204 | 66 | 33 | 0.997452 |
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
