SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5147

Length: 3299 nt

UniGene Fasta

>biog3_v1.0_unigene5147
AATGTGAAATTCATTTTAGCAAAATAATTGCAGTCTATTTCTATAGGGAAGGAACACAGAAATTCCTTTTAGCAAAATAATAAATACGTGTATGCTGCGGATTTGCAAAAGATTTCAAAGCAAAACCAGTGTTGATCTCGAAAAACTTCCGAGCAGTGTGTGTAAGCTGATATCGAAGTTCAAGACAGCTCGAAAAGAGCCCAAAGCAAAACCAGTGTTGAACTGGGAAAATTTCCACAGCAATCAGTGAAAGCCAATATCGAAATTCAGAACAACTGGAGGAAAGACTACAAGAAGTTGATGATGTTGTCATATCTCGAATCATTTGGTGTAGAAAATCACATCCTTCAGAGGATGGATATGTTGAATTGCACGAAGGTATACAGTAGATTCGATGGTCTGGTCGAGGGCCTTATTCCAAAAGTTCAGGAGCTCTTTTTGCTGGAACAACGAAAGCCCAGAAAACAGCAAAATCCCATCTATGAGCAGTTCCTGAACATCCTCAATAATGGCGTTGCATTGGTGAAAAAGTGTGAGAAAACCAGCCGTTTTAACGTTTTCCAGAAACTCAGATATGCTTCTCAAATCCACCAGCTGGAGAAGGAGATTCTTGACTTGGTTCAGTACCAGATGCCTGTCCAATTAAGTCTTGATGTTACGAATCTTGTAACAGAGATAAAGCGCATTCGCCAACTGAGCGAGCAGTCCATGGATGAGAGAATGGTAAATGAAGCAATCGTGGCCAAGCTCACCAATGATCCACTGAAGAATGCCATGATGCTACAACAAATGGGTTCAGATGACATGCTTGATGGAGATTTGGAAGAAGCTCCTGCATGTAGTTATAATGGCTCGGTGAAGTCTGATTTTATCGTAGGGCTTGAGGAAAATATTTGGAATTTGAAGAGAATTCTGCTCCGGAGAGATGTGTCCGTGGTTGGGGTGCAAGGTATGGGGGGCGTTGGCAAAACGACCATGGCGTTGGCCCTTTCCGATGACCAAGAAATCAAAGGTGCTTTCGGAAACAATATCATTTTCATCACAGTGTCACAGTCTCCAAACCTGAAGGTAATTTTAGAGACTATGTGGGAGAAGATTGTTCGCAGGAAGAAACCTGTTTTTCAGAGTGTGGAGGATGCACACAGACAGCTGCAGCAGCAGCTGCTGAGGCAAGCTAAGCCAACTCTGGTGGTGCTGGATGATGTCTGGTCTAGGGCAAATTTGGAACACTTGATATTTGAAGGTGAAGGTTATAAAACCCTTGTAACAACCCGAATTCGTTCTATTATACCCACAGCCACCTCTACACAGATTTATGAATTGCCCGTGCTGGATGATGCCAATGCTCAGTCCCTCTTTTGCTTCTGGGCGTTTGGACAGAAATCAATTCCAACAGATGCAGATGAACATCTAGTCAAGCAGGTGCAAGCAGAATGCAAAGGCCTGCCACTCGCTCTCAAGGTGATCGGAAGCTCTTTGCGTGGTGAAAGTCGCCCAGTGTGGGAGAGTGCTAAGAACAAGCTCCTGAATGGGGAGTCAATATCAGATTATCATAAAGAAGGACTTCTTAGATGCTTGGAGAGCAGTATTGATGTCCTGGATGAGGAAGTACGGGAGTGCTTCTTAGACCTGGGGTCCTTTCCAGAGGATAGGAAAATATCTGTGGACGCATTATTGGACATCTGGGTTTATGTGCGAAAGATGGAGTGGCACGATGCTTTTGTTATCTTATTGGAACTCGCTAGTAGGAATCTGTTAAACCTAACAAGCAATCTCAGGAGTTGTGCCATCAATTATGGAAGTACCTCGGAGCTCTACTTTTCTCAACATGATGTAATGCGAGACTTGGCCCTATATTTGGCATCCCGAGACTGGATTGTGAACAGGAAGAGGTTGTTTATGCCTAAAAAGGAGGATGGATTGCCAGGGAAATGGGAGTTACTCAAAGACCAAGCTTTTAATGCCCAAGTTGTTTCAATTCACACAGGTGCAATGGAAGAGGATCAGTGGTGCGAGATGAATTTTCGACGAGCAGAAGCCTTGGTTTTAAATTTTTCTGCGGGCAGCTACTTTCTTCCTTCGTTTTTAAGTTCTATGACAAAGCTTAAAGTCCTCATAGTACTCAATTATGGATCAAAGAGAGCCACAGTAAACGGATTACCGTCGCCATCTTCTCTCCCGCAGCTTAAGACCATACGCTTGGAGAGGTTGAATGTGCCTTCACTTCAAGAGCAGAGCAAACTCTTTCAGAACTTAGAAAAACTCTCGTTGAGCTTATGTGAAGGACTTGGAAATATGTCCAGGTTTAACACCACCCAGTCGAGCCTAAAGCTTCCCATAATGCTAGATTTTAACTTGGACCACTGCTGTGATTTGGACGAGTTGCCCTCTGATATTTGCGACATGTCTTCAGTGGTAAACTGGTCTATCACCAACTGTCACCTTCTTCAAAAGTTACCTGATGACATGGAAAAGCTTAGCTCTTTAAGAATGTTAAGGCTATCTGCATGTCTAGGCTTGAAAGAGCTACCAGCATCCATTGGAAAACTTGGGAAGCTTGAATATCTGGACATTTCGCTGTGTGAGTGCTTAAAGGAAATTCCCGAGGAAATAGGACAACTAAAGAAACTCCAAGTACTTGACATGAGAGAGTGCTCTCGTTTGAGGAAGCTGCCTAAGTCAGTGGAAGGCATGAAATCTCTGAGGCATGTTATCTGCGATGAGAAGATTGGGCAGCAATGGTTGCGTGTCAAGAGCTCTGTTCTCAACGAGCTTAAAGTTGAAATTGTGGATGCACATTTCAGCTTGGATTGGCTCGATGGTTGATATCACCCAGACAGGATGCAGGTGCAACTAGACTGCAATTCACCTGCATTCATGACGAGGACATGGTGCGGTCAAGACCATTTACGCTACTTGCATTTGTTGAAGGTCCAACTTGGTGTTACCCGTGCGTGTAGCTATTCTGAATCTCTACTTGGGTGTTTTTATGGCTTTATGTCGTCTGTGTGAGTGTGCACGCTTTATTTTGAACAAGGACACTTTATTTTAAGAATATAGAATTATGCCACGTAGGTTTGACGTATGTGTGGAGTCATAGGTATTGGGAAGTTGACTTTATTTTAAGAATATAGAATTATGCCACGTAGGTTTGACGTATGTGTGGAGTCATAGGTATTGGGAAGTTACCAAGCTTATCAGAAGTCCTTGGTGCCCGTGAATGTAAATGGTGATTTCCTTTACAATAATGTCTTGGTTTATATGGTATGTAATGACAATATGTTATACATTGACACATT

Ace file of the UniGene biog3_v1.0_unigene5147

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15954	41/369
SustainPine v2.0	sp_v2.0_unigene15969	208/369
SustainPine v2.0	sp_v2.0_unigene21606	4/369
SustainPine v2.0	sp_v2.0_unigene29381	1/369
SustainPine v2.0	sp_v2.0_unigene61253	113/369

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=5 Tax=Pinaceae RepID=Q1L6F3_PINLA	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	cc-nbs-lrr protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	apoplast	GO:0048046	Cellular Component	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3		IPR014011	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKC3

Fln msg:

Fln protein: MMLSYLESFGVENHILQRMDMLNCTKVYSRFDGLVEGLIPKVQELFLLEQRKPRKQQNPIYEQFLNILNNGVALVKKCEKTSRFNVFQKLRYASQIHQLEKEILDLVQYQMPVQLSLDVTNLVTEIKRIRQLSEQSMDERMVNEAIVAKLTNDPLKNAMMLQQMGSDDMLDGDLEEAPACSYNGSVKSDFIVGLEENIWNLKRILLRRDVSVVGVQGMGGVGKTTMALALSDDQEIKGAFGNNIIFITVSQSPNLKVILETMWEKIVRRKKPVFQSVEDAHRQLQQQLLRQAKPTLVVLDDVWSRANLEHLIFEGEGYKTLVTTRIRSIIPTATSTQIYELPVLDDANAQSLFCFWAFGQKSIPTDADEHLVKQVQAECKGLPLALKVIGSSLRGESRPVWESAKNKLLNGESISDYHKEGLLRCLESSIDVLDEEVRECFLDLGSFPEDRKISVDALLDIWVYVRKMEWHDAFVILLELASRNLLNLTSNLRSCAINYGSTSELYFSQHDVMRDLALYLASRDWIVNRKRLFMPKKEDGLPGKWELLKDQAFNAQVVSIHTGAMEEDQWCEMNFRRAEALVLNFSAGSYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPSPSSLPQLKTIRLERLNVPSLQEQSKLFQNLEKLSLSLCEGLGNMSRFNTTQSSLKLPIMLDFNLDHCCDLDELPSDICDMSSVVNWSITNCHLLQKLPDDMEKLSSLRMLRLSACLGLKELPASIGKLGKLEYLDISLCECLKEIPEEIGQLKKLQVLDMRECSRLRKLPKSVEGMKSLRHVICDEKIGQQWLRVKSSVLNELKVEIVDAHFSLDWLDG*

Protein Length: 843

Fln nts: AATGTGAAATTCATTTTAGCAAAATAATTGCAGTCTATTTCTATAGGGAAGGAACACAGAAATTCCTTTTAGCAAAATAATAAATACGTGTATGCTGCGGATTTGCAAAAGATTTCAAAGCAAAACCAGTGTTGATCTCGAAAAACTTCCGAGCAGTGTGTGTAAGCTGATATCGAAGTTCAAGACAGCTCGAAAAGAGCCCAAAGCAAAACCAGTGTTGAACTGGGAAAATTTCCACAGCAATCAGTGAAAGCCAATATCGAAATTCAGAACAACTGGAGGAAAGACTACAAGAAGTTG_-_ATGATGTTGTCATATCTCGAATCATTTGGTGTAGAAAATCACATCCTTCAGAGGATGGATATGTTGAATTGCACGAAGGTATACAGTAGATTCGATGGTCTGGTCGAGGGCCTTATTCCAAAAGTTCAGGAGCTCTTTTTGCTGGAACAACGAAAGCCCAGAAAACAGCAAAATCCCATCTATGAGCAGTTCCTGAACATCCTCAATAATGGCGTTGCATTGGTGAAAAAGTGTGAGAAAACCAGCCGTTTTAACGTTTTCCAGAAACTCAGATATGCTTCTCAAATCCACCAGCTGGAGAAGGAGATTCTTGACTTGGTTCAGTACCAGATGCCTGTCCAATTAAGTCTTGATGTTACGAATCTTGTAACAGAGATAAAGCGCATTCGCCAACTGAGCGAGCAGTCCATGGATGAGAGAATGGTAAATGAAGCAATCGTGGCCAAGCTCACCAATGATCCACTGAAGAATGCCATGATGCTACAACAAATGGGTTCAGATGACATGCTTGATGGAGATTTGGAAGAAGCTCCTGCATGTAGTTATAATGGCTCGGTGAAGTCTGATTTTATCGTAGGGCTTGAGGAAAATATTTGGAATTTGAAGAGAATTCTGCTCCGGAGAGATGTGTCCGTGGTTGGGGTGCAAGGTATGGGGGGCGTTGGCAAAACGACCATGGCGTTGGCCCTTTCCGATGACCAAGAAATCAAAGGTGCTTTCGGAAACAATATCATTTTCATCACAGTGTCACAGTCTCCAAACCTGAAGGTAATTTTAGAGACTATGTGGGAGAAGATTGTTCGCAGGAAGAAACCTGTTTTTCAGAGTGTGGAGGATGCACACAGACAGCTGCAGCAGCAGCTGCTGAGGCAAGCTAAGCCAACTCTGGTGGTGCTGGATGATGTCTGGTCTAGGGCAAATTTGGAACACTTGATATTTGAAGGTGAAGGTTATAAAACCCTTGTAACAACCCGAATTCGTTCTATTATACCCACAGCCACCTCTACACAGATTTATGAATTGCCCGTGCTGGATGATGCCAATGCTCAGTCCCTCTTTTGCTTCTGGGCGTTTGGACAGAAATCAATTCCAACAGATGCAGATGAACATCTAGTCAAGCAGGTGCAAGCAGAATGCAAAGGCCTGCCACTCGCTCTCAAGGTGATCGGAAGCTCTTTGCGTGGTGAAAGTCGCCCAGTGTGGGAGAGTGCTAAGAACAAGCTCCTGAATGGGGAGTCAATATCAGATTATCATAAAGAAGGACTTCTTAGATGCTTGGAGAGCAGTATTGATGTCCTGGATGAGGAAGTACGGGAGTGCTTCTTAGACCTGGGGTCCTTTCCAGAGGATAGGAAAATATCTGTGGACGCATTATTGGACATCTGGGTTTATGTGCGAAAGATGGAGTGGCACGATGCTTTTGTTATCTTATTGGAACTCGCTAGTAGGAATCTGTTAAACCTAACAAGCAATCTCAGGAGTTGTGCCATCAATTATGGAAGTACCTCGGAGCTCTACTTTTCTCAACATGATGTAATGCGAGACTTGGCCCTATATTTGGCATCCCGAGACTGGATTGTGAACAGGAAGAGGTTGTTTATGCCTAAAAAGGAGGATGGATTGCCAGGGAAATGGGAGTTACTCAAAGACCAAGCTTTTAATGCCCAAGTTGTTTCAATTCACACAGGTGCAATGGAAGAGGATCAGTGGTGCGAGATGAATTTTCGACGAGCAGAAGCCTTGGTTTTAAATTTTTCTGCGGGCAGCTACTTTCTTCCTTCGTTTTTAAGTTCTATGACAAAGCTTAAAGTCCTCATAGTACTCAATTATGGATCAAAGAGAGCCACAGTAAACGGATTACCGTCGCCATCTTCTCTCCCGCAGCTTAAGACCATACGCTTGGAGAGGTTGAATGTGCCTTCACTTCAAGAGCAGAGCAAACTCTTTCAGAACTTAGAAAAACTCTCGTTGAGCTTATGTGAAGGACTTGGAAATATGTCCAGGTTTAACACCACCCAGTCGAGCCTAAAGCTTCCCATAATGCTAGATTTTAACTTGGACCACTGCTGTGATTTGGACGAGTTGCCCTCTGATATTTGCGACATGTCTTCAGTGGTAAACTGGTCTATCACCAACTGTCACCTTCTTCAAAAGTTACCTGATGACATGGAAAAGCTTAGCTCTTTAAGAATGTTAAGGCTATCTGCATGTCTAGGCTTGAAAGAGCTACCAGCATCCATTGGAAAACTTGGGAAGCTTGAATATCTGGACATTTCGCTGTGTGAGTGCTTAAAGGAAATTCCCGAGGAAATAGGACAACTAAAGAAACTCCAAGTACTTGACATGAGAGAGTGCTCTCGTTTGAGGAAGCTGCCTAAGTCAGTGGAAGGCATGAAATCTCTGAGGCATGTTATCTGCGATGAGAAGATTGGGCAGCAATGGTTGCGTGTCAAGAGCTCTGTTCTCAACGAGCTTAAAGTTGAAATTGTGGATGCACATTTCAGCTTGGATTGGCTCGATGGTTGA___TATCACCCAGACAGGATGCAGGTGCAACTAGACTGCAATTCACCTGCATTCATGACGAGGACATGGTGCGGTCAAGACCATTTACGCTACTTGCATTTGTTGAAGGTCCAACTTGGTGTTACCCGTGCGTGTAGCTATTCTGAATCTCTACTTGGGTGTTTTTATGGCTTTATGTCGTCTGTGTGAGTGTGCACGCTTTATTTTGAACAAGGACACTTTATTTTAAGAATATAGAATTATGCCACGTAGGTTTGACGTATGTGTGGAGTCATAGGTATTGGGAAGTTGACTTTATTTTAAGAATATAGAATTATGCCACGTAGGTTTGACGTATGTGTGGAGTCATAGGTATTGGGAAGTTACCAAGCTTATCAGAAGTCCTTGGTGCCCGTGAATGTAAATGGTGATTTCCTTTACAATAATGTCTTGGTTTATATGGTATGTAATGACAATATGTTATACATTGACACATT

Fln Alignment:

Contig5147___NHILQRMDMLNCTKVYSRFDGLVEGLIPKVQELFLLEQRKPRKQQNPIYEQFLNILNNGVALVKKCEKTSRFNVFQKLRYASQIHQLEKEILDLVQYQMPVQLSLDVTNLVTEIKRIRQLSEQ-SMDERMVNEAIVAKLTNDPLKNAMMLQQMGSDDMLDGDLEEAPACSYNGSVKSDFIVGLEENIWNLKRILLRRDXXXXXXXXXXXXXKTTMALALSDDQEIKGAFGNNIIFITVSQSPNLKVILETMWEKIVRRKKPVFQSVEDAHXXXXXXXXXXAKPTLVVLDDVWSRANLEHLIFEGEGYKTLVTTRIRSIIPTATSTQIYELPVLDDANAQSLFCFWAFGQKSIPTDADEHLVKQVQAECKGLPLALKVIGSSLRGESRPVWESAKNKLLNGESISDYHKEGLLRCLESSIDVLDEEVRECFLDLGSFPEDRKISVDALLDIWVYVRKMEWHDAFVIXXXXXXXXXXXXXXXXXXCAINYGSTSELYFSQHDVMRDLALYLASRDWIVNRKRLFMPKKEDGLPGKWELLKDQAFNAQVVSIHTGAMEEDQWCEMNFRRAEALVLNFSAGSYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPSPSSLPQLKTIRLERLNVPSLQEQSKLFQNLEKLSLSLCEGLGNMSRFNTTQSSLKLPIMLDFNLDHCCDLDELPSDICDMSSVVNWSITNCHLLQKLPDDMEKLSSLRMLRLSACLGLKELPASIGKLGKLEYLDISLCECLKEIPEEIGQLKKLQVLDMRECSRLRKLPKSVEGMKSLRHVICDEKIGQQWLRVKSSVLNELKVEIVDAHFSLDWLDG
B8LKC3_________________DHILYGIDILNCKKSYSRFDGLVEGLLPKVQELYLSEQRKPKKEKNPIYEQFLNILNDGVALVKKCKNTSRYNVFQNLRYASQIHQLEKEITDFVRYQMPVNLSLDVKNFIEELKNLRQLCEKGSVDERKVNEAIVPKLTNDPQKNAVMLQQIGSDDMFDGVLDEAPP-----SPKSDFVVGLEKNISNVKRILLDRDVSVVGVDGMGGVGKTTMAMALSDDQEIKGVFRNNIVFITVSQSPNLKVILETMWEKIVRRKKPEFQSVEDAHRQLQQQLLRQAKPTLVVLDDVWSRANLENLLFEGEGYKTLVTTRDRSTIPTTTSIRIYELPVLDDADAMPLFCFWAFGQKSIPSSADEHLVKQVQAECKGLPLALKVIGSSLHGEPRPVWESAKNKLRNGESISDYHKEGLLRRLESSIDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKMEWHDAFVILLELARRNLLNLTSNLRSRAINYGSASELYFSQHDVMRDLALHLASRDRIVQRKRLFMPKKEESLPGKWEVLKDQAFDAQVVSIHTGAMEEDQWCEMNFRQAEALVLNFSASNYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPAPSSLTQLRTIRLERLNVPSLQEHSRAFQSLEKLSLSLCEGLGNMSRFNSTQSSLKLPIMLDFNLDHCCDLEELPPGICDMSSVENWSITNCHLLQKLPDDMGKLCSLRMLRLSACLGLKELPDSIGKLGKLEYLDISLCECLKELPEEIGQLKKLQVLDMRECSRLRKLPKSVEGLKSLKHVICDEKIGQQWLRVKSSVLKELRVEIVDAHFSLDWLDG

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
1754	5	95			0.997749
1755		5		95	0.997749
1756	5		94		0.997984
1916		10	90		0.90298
1919			90	10	0.90298
1932	88	11			0.923564
1935			88	11	0.923564
1947	87			12	0.992554
1948	87			12	0.992554
1964	16		83		0.994512
1966	16	83			0.994512
1967		83		16	0.994512
1968	83			16	0.994512
1972	20			80	0.995493
1973		20	80		0.995493
1974	20			80	0.995493
1981	25			75	0.996473
1984		75		25	0.996473
1985	75			25	0.996473
2116	25	75			0.996473
2119	75			25	0.996473
2155		80		20	0.995493
2344	6		93		0.99903
2347	90			9	1.0
2623	88			11	1.0
2676	6	93			0.999453
2678	93			6	0.999453
2740	93			6	0.999264
2985	10		90		0.999898
2986		10		89	0.999919
2987	10			89	0.999919
3054		9	90		0.999842
3056	90			9	0.999842
3069	9	90			0.999872
3073			90	9	0.999842
3166	13		86		0.999973
3167		13	86		0.999973
3169			80	13	0.999961
3178		25		75	1.0
3209	10	90			0.90298
3228	88	11			0.923564
3233	22			77	0.999999
3234		25	75		1.0
3236	12			87	0.992554
3252	20		80		0.995493
3253		20		80	0.995493
3254	20	80			0.995493
3272	25			75	0.996473
3273	75	25			0.996473
3276			75	25	0.996473
3283		33		66	0.997452
3284	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain