SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5116

Length: 449 nt

UniGene Fasta

>biog3_v1.0_unigene5116
GATCTCCACCGTGAACATATAAATGTGGTAAAGTTTGCTCATCATTCCCCATACTTGTTTGCGACTTCATCATTTGATCAGGAAATCAAAACGTGGGACTTACGACAAAAGCCTACACATCCTTTGTATACAACGACCAGCTTAAGAGGGAATGTGATGGTGTGCTTTTCTCGTGATGATCATTATATCCTTTCCTCAGCTGTGGATAATGAGGTCAAGCAACACTTAGCTGTAGATGGGAGGCTACATATGAAATTTGACATTGCTCCTACAGGAAGTGCTCAGAACTATACTCGGTCATATTACATGAATGGGAGGGATTACATTATTAGTGGGAGTTGTGAGGAAAATGTTGTTCGTATATGCTGTGCTCAGACTGGCAGACGACTTAAGGATCTTGCCCTTGAGGGGCGTGGATCGAGAAGTTCTTTGTATGTACAGTCTACATT

Ace file of the UniGene biog3_v1.0_unigene5116

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1891	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj\|BAC41980.1\| unknown protein [Arabidopsis thaliana] gb\|AAO64896.1\| At4g34280 [Arabidopsis thaliana] gb\|AEE86354.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	-	-	62%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	84%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	79%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	U2A'/phosphoprotein 32 family A, C-terminal	IPR003603	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SP45

Fln msg: Distance to subject end: 53 aas, your sequence is shorter than subject: 149 - 1262

Fln protein: DLHREHINVVKFAHHSPYLFATSSFDQEIKTWDLRQKPTHPLYTTTSLRGNVMVCFSRDDHYILSSAVDNEVKQHLAVDGRLHMKFDIAPTGSAQNYTRSYYMNGRDYIISGSCEENVVRICCAQTGRRLKDLALEGRGSRSSLYVQST

Protein Length: 150

Fln nts: GATCTCCACCGTGAACATATAAATGTGGTAAAGTTTGCTCATCATTCCCCATACTTGTTTGCGACTTCATCATTTGATCAGGAAATCAAAACGTGGGACTTACGACAAAAGCCTACACATCCTTTGTATACAACGACCAGCTTAAGAGGGAATGTGATGGTGTGCTTTTCTCGTGATGATCATTATATCCTTTCCTCAGCTGTGGATAATGAGGTCAAGCAACACTTAGCTGTAGATGGGAGGCTACATATGAAATTTGACATTGCTCCTACAGGAAGTGCTCAGAACTATACTCGGTCATATTACATGAATGGGAGGGATTACATTATTAGTGGGAGTTGTGAGGAAAATGTTGTTCGTATATGCTGTGCTCAGACTGGCAGACGACTTAAGGATCTTGCCCTTGAGGGGCGTGGATCGAGAAGTTCTTTGTATGTACAGTCTACATT

Fln Alignment:

Contig5116___DLHREHINVVKFAHHSPYLFATSSFDQEIKTWDLRQKPTHPLYTTTSLRGNVMVCFSRDDHYILSSAVDNEVKQHLAVDGRLHMKFDIAPTGSAQNYTRSYYMNGRDYIISGSCEENVVRICCAQTGRRLKDLALEGRGSRSSLYVQS
A9SP45_________________DLHKEHINVVKFANHSPQIFATSSFDKEIKMWDLRQKVTQPLYTVRSNRGNVMVCFSRDDHYLLSSAVDNEVRQHLAVDGRLHMKFDITPKGSNQNYTRSYYLNGRDYIISGSCEENVVRVCCAQTGRRLRDLAVEGRGLRNSSYVQS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
234	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain