SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4986

Length: 273 nt

UniGene Fasta

>biog3_v1.0_unigene4986
GCTCATTTGATTTTGATTTTCTGTGCCATTGAGCCTTCAATGAGATCTGCCTGGGGGGAGCGCGTAGCAGAACTATTAAAACATGACGGAGAGCTTATTACACTCATGTTCCCAATAGATGACCATGAAGGGGGCCCACCATATGCAGTTTCTATTCCACGGTACGAGGAAGTTTTACATCCATTGGGTTTTGAGGCAACCTCTATAGAGAAAAATGAAATGGCTGTTGGAAGACGCAAGGGCAGAGAAATGTTAGGTAGATGGAAGAACATT

Ace file of the UniGene biog3_v1.0_unigene4986

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1588	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative thiol methyltransferase 2 [Arabidopsis thaliana] sp\|Q6AWU6.1\|HOL3_ARATH RecName: Full=Probable thiol methyltransferase 2; AltName: Full=Protein HARMLESS TO OZONE LAYER 3; Short=AtHOL3 gb\|AAT85748.1\| At2g43940 [Arabidopsis thaliana] gb\|AAU45227.1\|	-	-	62%
FL-Next	sp=Thiocyanate methyltransferase 1; Brassica oleracea (Wild cabbage).	-	-	62%
Blast2go	methyl chloride transferase	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Thiopurine S-methyltransferase.	EC:2.1.1.67	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Drug metabolism - other enzymes	00983		0.0	76%
Blast2go	Thiol S-methyltransferase.	EC:2.1.1.9	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	defense response	GO:0006952	Biological Process	76%
Blast2go	glucosinolate catabolic process	GO:0019762	Biological Process	76%
Blast2go	methylation	GO:0032259	Biological Process	76%
Blast2go	thiopurine S-methyltransferase activity	GO:0008119	Molecular Function	76%
Blast2go	thiol S-methyltransferase activity	GO:0018708	Molecular Function	76%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Thiopurine S-methyltransferase	IPR008854	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q93V78

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 91 - 226

Fln protein: AHLILIFCAIEPSMRSAWGERVAELLKHDGELITLMFPIDDHEGGPPYAVSIPRYEEVLHPLGFEATSIEKNEMAVGRRKGREMLGRWKNI

Protein Length: 92

Fln nts: GCTCATTTGATTTTGATTTTCTGTGCCATTGAGCCTTCAATGAGATCTGCCTGGGGGGAGCGCGTAGCAGAACTATTAAAACATGACGGAGAGCTTATTACACTCATGTTCCCAATAGATGACCATGAAGGGGGCCCACCATATGCAGTTTCTATTCCACGGTACGAGGAAGTTTTACATCCATTGGGTTTTGAGGCAACCTCTATAGAGAAAAATGAAATGGCTGTTGGAAGACGCAAGGGCAGAGAAATGTTAGGTAGATGGAAGAACATT

Fln Alignment:

Contig4986___LIFCAIEPSMRSAWGERVAELLKHDGELITLMFPIDDHEGGPPYAVSIPRYEEVLHPLGFEATSIEKNEMAVGRRKGREMLGRWKNI
Q93V78_________________VVFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHDGGPPYKVAVSTYEDVLVPVGFKAVSIEENPYSIATRKGKEKLGRWKKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain