SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4946

Length: 809 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4946 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6504	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Arabidopsis thaliana] sp\|Q9M8Y0.1\|SEC_ARATH RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC; AltName: Full=Protein SECRET AGENT gb\|A	-	-	78%
FL-Next	sp=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	o-linked c transferase like protein	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein N-acetylglucosaminyltransferase.	EC:2.4.1.94	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	protein O-linked glycosylation	GO:0006493	Biological Process	88%
Blast2go	protein N-acetylglucosaminyltransferase activity	GO:0016262	Molecular Function	88%
Blast2go	binding	GO:0005488	Molecular Function	88%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Sel1-like	IPR006597	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M8Y0

Fln msg: Distance to subject end: 225 aas, your sequence is shorter than subject: 269 - 977

Fln protein: YKLSLLLRPDFPEAICNLLHTLQCVCDWEDRDRKFVEVETIVRRQIKMSVLPSVQPFHAIAYPFEPVLTLEISRKYAEHCLLVASRFGPQSFVHPPRLPVKGEGGSGRLRVGYVSSDFGNHPLSHLMGSVFGMHNQEHIEVFCYALSQSDGSEWRQRIQSEVEHFIDVSALSSDMIARMISEAHIQILINLNGYTKGARNEIFAMKPAPIQVSYMGFPGTTGANYIDYLVTDEFVSPTHLSHIYSEKLVHMPHCYFVNDYKQKNQDVYI

Protein Length: 270

Fln nts: GTTACAAGCTAAGCTTGTTACTGCGTCCTGATTTTCCAGAAGCAATCTGCAACCTGCTGCACACTTTGCAGTGTGTATGTGATTGGGAGGACCGTGACCGTAAGTTTGTTGAAGTTGAGACAATTGTAAGGCGGCAGATAAAGATGTCAGTTCTTCCAAGCGTGCAGCCATTTCATGCAATCGCTTATCCCTTTGAACCAGTGTTGACTTTAGAAATCAGTCGGAAATATGCAGAGCATTGTCTTCTTGTTGCATCTCGTTTTGGACCTCAGTCTTTTGTACACCCTCCTCGTTTGCCTGTGAAAGGTGAGGGTGGCAGCGGCAGGCTTAGGGTGGGGTATGTCAGCAGTGATTTTGGTAACCACCCACTTTCACACCTCATGGGCTCTGTTTTTGGTATGCATAATCAAGAGCACATTGAGGTATTTTGCTATGCATTGAGTCAGAGTGATGGCAGTGAGTGGAGACAGCGTATACAATCAGAGGTAGAACACTTCATTGATGTTTCTGCCCTTTCATCTGATATGATTGCACGGATGATATCTGAAGCTCATATTCAAATTCTTATCAACTTGAATGGGTATACAAAGGGTGCTCGGAATGAAATTTTTGCAATGAAACCAGCCCCCATTCAAGTTTCATATATGGGCTTTCCTGGAACCACTGGTGCCAATTATATTGACTATTTAGTGACAGACGAGTTTGTTTCACCTACACATTTATCACATATCTATTCTGAGAAGCTTGTACATATGCCACATTGTTATTTTGTGAATGATTACAAGCAGAAAAATCAAGATGTTTACATT

Fln Alignment:

Contig4946___YKLSLLLRPDFPEAICNLLHTLQCVCDWEDRDRKFVEVETIVRRQIKMSVLPSVQPFHAIAYPFEPVLTLEISRKYAEHCLLVASRFGPQSFVHPPRLPVKGEGGSGRLRVGYVSSDFGNHPLSHLMGSVFGMHNQEHIEVFCYALSQSDGSEWRQRIQSEVEHFIDVSALSSDMIARMISEAHIQILINLNGYTKGARNEIFAMKPAPIQVSYMGFPGTTGANYIDYLVTDEFVSPTHLSHIYSEKLVHMPHCYFVNDYKQKNQDV
Q9M8Y0_________________YKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMFAEVESIIRRQINMSVLPSVQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPPFTHPAGLPVKREGGFKRLRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNTEWRQRIQSEAEHFLDVSAMSSDAIAKIINQDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDV

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
126	75		25		0.996473
127			75	25	0.996473
198	25	75			0.996473
199	75	25			0.996473
608	14	85			0.993533
609	85			14	0.993533
610		85	14		0.993533
639	85	14			0.993533
642			85	14	0.993533
736	75			25	0.996473
743	33		66		0.997452
746	66			33	0.997452
747	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain