SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4945

Length: 372 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene4945
AATGTGTGAGAATGATTTGCGATTGTTGTGCCCCTCCTATGAAGGTAATACAAGACAAACGGTTGCGTCGGCCTTTGAGCTTGTGTGGCTCCACACTGCGGGCACCTCATGGCTGCCATGCGCAGTACATGGCCAACATGGGTTCTATTGCATCTCTGGTGATGTCAGTGACGATAAATGAGAACGGAGATGACAGTGAAGGCAATGGGCTTCAACAACCGCAGAAAGGAAGGAAGCTTTGGGGCCTTGTAGTTTGCCATCACACAAGTCCACGGGTTATCCCGTTCCCTTTGAGGTATGCTTGTGAATTTCTGATGCAAGTTTTGGCATTCAGCTAAACAAAGAGGTTGAATTAGCCGCTCAGTTGACATT

Ace file of the UniGene biog3_v1.0_unigene4945 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6813	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB	-	-	93%
FL-Next	sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa).	-	-	86%
Blast2go	phytochrome o	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	red, far-red light phototransduction	GO:0009585	Biological Process	93%
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	93%
Blast2go	protein-tetrapyrrole linkage	GO:0017006	Biological Process	93%
Blast2go	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	93%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	93%
Blast2go	protein-chromophore linkage	GO:0018298	Biological Process	93%
Blast2go	detection of visible light	GO:0009584	Biological Process	93%
Blast2go	ATP binding	GO:0005524	Molecular Function	93%
Blast2go	G-protein coupled photoreceptor activity	GO:0008020	Molecular Function	93%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	93%
Blast2go	two-component sensor activity	GO:0000155	Molecular Function	93%
Blast2go	membrane	GO:0016020	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Phytochrome	IPR001294	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Phytochrome A/B/C/D/E	IPR012129	-	-
Sma3	Phytochrome, central region	IPR013515	-	-
Sma3	Phytochrome chromophore binding site	IPR013516	-	-
Sma3	PAS fold-2	IPR013654	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Phytochrome chromophore attachment domain	IPR016132	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q40762

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 715 aas, your sequence is shorter than subject: 112 - 1136

Fln protein: CVRMICDCCAPPMKVIQDKRLRRPLSLCGSTLRAPHGCHAQYMANMGSIASLVMSVTINENGDDSEGNGLQQPQKGRKLWGLVVCHHTSPRVIPFPLRYACEFLMQVLAFS*

Protein Length: 113

Fln nts: AATGTGTGAGAATGATTTGCGATTGTTGTGCCCCTCCTATGAAGGTAATACAAGACAAACGGTTGCGTCGGCCTTTGAGCTTGTGTGGCTCCACACTGCGGGCACCTCATGGCTGCCATGCGCAGTACATGGCCAACATGGGTTCTATTGCATCTCTGGTGATGTCAGTGACGATAAATGAGAACGGAGATGACAGTGAAGGCAATGGGCTTCAACAACCGCAGAAAGGAAGGAAGCTTTGGGGCCTTGTAGTTTGCCATCACACAAGTCCACGGGTTATCCCGTTCCCTTTGAGGTATGCTTGTGAATTTCTGATGCAAGTTTTGGCATTCAGCTAAACAAAGAGGTTGAATTAGCCGCTCAGTTGACATT

Fln Alignment:

Contig4945___VRMICDCCAPPMKVIQDKRLRRPLSLCGSTLRAPHGCHAQYMANMGSIASLVMSVTINENGDDSEGNGLQQPQKGRKLWGLVVCHHTSPRVIPFPLRYACEFLMQVLAFS*TKRL
Q40762_________________VRMICDCCAPPVNVIQDKRLRQPLSLCGSTLRAPHGCHAQYMANMGSIASLVMSVTTNENGDDSEGGGQQQPQNRRKLWGLVVCHHTSPRVIPFPLRYACEFLMQVFGIQLNKEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain