SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4911

Length: 998 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4911 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4725	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	protein phosphatase 2C (PP2C) [Fagus sylvatica]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein phosphatase	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	81%
Blast2go	metal ion binding	GO:0046872	Molecular Function	81%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	81%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA04

Fln msg: Overlapping hits, possible frame ERROR between 193 and 192, your sequence is shorter than subject: 330 - 370

Fln protein: HVAGEFSMALAQANQLVEDQCQVEIGPLGTFVGIYDGHGGPEAARFINDHLFRHFQNFALEQRxxMSAEVIRNAFLATEEGFMSLVTNAWPTKPQLAAVGSCCLVGLVYEKTLYVANLGDSRVVMGRLIRSTGEIAAVQLSAEHNASIEAVRQELRSLHPDDSQIVVLKHDVLACKGHNSGL*IYWGCILEKARV**RTSQF*VSSCRTT*KPVISAEPSITTHTLQPHDRFLIFASDGLWEHLSNQEAVDIVHNHPHVGSAKRLIKAALQEAARKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDHDLISKGSRRSLLQSVRGGGVS*

Protein Length: 331

Fln nts: GCATGTGGCCGGGGAGTTCTCCATGGCTCTAGCTCAGGCCAATCAGCTCGTGGAGGATCAGTGCCAGGTCGAGATTGGCCCCTTGGGGACCTTTGTTGGCATCTATGATGGTCATGGAGGTCCAGAAGCTGCTCGTTTTATCAATGATCATCTCTTTCGCCATTTCCAGAACTTTGCACTGGAGCAGCGGxxxxxxATGTCTGCTGAGGTGATACGGAATGCTTTTCTAGCAACTGAAGAGGGATTTATGTCTCTTGTGACAAATGCTTGGCCCACAAAACCACAGCTTGCAGCAGTTGGTTCTTGCTGTTTAGTTGGTCTTGTGTACGAGAAGACACTTTACGTTGCCAACCTGGGAGACTCACGTGTTGTAATGGGGAGACTGATCAGGTCTACTGGAGAAATAGCTGCTGTGCAGTTGTCAGCAGAACACAATGCTAGCATAGAGGCTGTAAGACAAGAGCTGCGGTCATTACATCCAGATGATTCCCAGATTGTAGTTCTCAAGCATGACGTATTGGCGTGTAAAGGGCATAATTCAGGTCTCTAGATCTATTGGGGATGCATACTTGAAAAGGCCCGAGTTTAATAGAGAACCTCTCAATTCTAAGTTTCGTCTTGCAGAACCACTTAGAAGCCCGTTATATCAGCTGAACCATCAATCACCACCCACACCCTTCAGCCACATGATCGCTTCCTTATATTTGCTTCAGATGGGCTTTGGGAACATCTGAGCAACCAGGAAGCTGTTGATATTGTCCATAATCATCCGCATGTGGGAAGTGCCAAGAGACTAATTAAGGCTGCTCTGCAAGAGGCTGCAAGGAAACGAGAAATGCGATATTCAGACCTCAAAAAAATTGACCGAGGAGTTCGGCGACATTTCCATGATGACATAACTGTCATTGTTGTATTCCTGGATCATGACTTAATCAGCAAGGGCTCTCGTCGTAGTTTATTGCAGTCAGTGAGAGGTGGTGGAGTAAGTTGATTGTACATT

Fln Alignment:

Contig4911___HVAGEFSMALAQANQLVEDQCQVEIGPLGTFVGIYDGHGGPEAARFINDHLFRHFQNFALEQRxMSAEVIRNAFLATEEGFMSLVTNAWPTKPQLAAVGSCCLVGLVYEKTLYVANLGDSRVVMGRLIRSTGEIAAVQLSAEHNASIEAVRQELRSLHPDDSQIVVLKHDVLACKGHNSGL*IYWGCILEKARV**RTSQF*VSSCRTT*KPVISAEPSITTHTLQPHDRFLIFASDGLWEHLSNQEAVDIVHNHPHVGSAKRLIKAALQEAARKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDHDLISKGSRRSLLQSVRGGGVS
D5AA04_________________HVAGEFSMAVAQANQLVEDQCQVEIGPFGTFVGVYDGHGGPDAARFINDHLFRHFQNFALEQRxMSAEVIRNAFLATEEGFLSLVTNAWPTKPQLAAVGSCCLVGLVYEKTLYVANLGDSRVVMGRLIRATGEIAAVQLSAEHNASMEAVRQELRSSHPDDPQIVVLKHDVWRVKGIIQVSRSIGDAYLKRPEFNREPLNPKFRLPEPLRRPVLTAEPSITTYTLQPHDRFLIFASDGLWEHLSNQEAVDIVHNHPHVGSAKRLIKAALHEAARKREMRYSDLKRIDRGVRRHFHDDITVIVVFLDHDLISKGSRRSLSQSVRGGGVS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
160	33			66	0.997452
161		66		33	0.997452
163		66		33	0.997452
485	66		33		0.997452
486		66		33	0.997452
501		83		16	0.994512
502			16	83	0.994512
503	83			16	0.994512
572	11			88	0.923564
573	11	88			0.923564
746	80			20	0.995493
747			80	20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain