SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4889

Length: 1658 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4889 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7734	40/40

Source	Descriptions	Term	Type	Identity
AutoFact	Iron-sulfur cluster assembly protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8IR30_CHLRE	-	-	39%
FL-Next	sp=NifU-like protein 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	68%
Blast2go	at4g01940 t7b11_20	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	iron-sulfur cluster assembly	GO:0016226	Biological Process	78%
Blast2go	chloroplast organization	GO:0009658	Biological Process	78%
Blast2go	DNA repair	GO:0006281	Biological Process	78%
Blast2go	iron-sulfur cluster binding	GO:0051536	Molecular Function	78%
Blast2go	iron ion binding	GO:0005506	Molecular Function	78%
Blast2go	nuclease activity	GO:0004518	Molecular Function	78%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	NIF system FeS cluster assembly, NifU, C-terminal	IPR001075	-	0.0	-
Sma3	Excinuclease ABC, C subunit, N-terminal	IPR000305	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q93W77

Fln msg: your sequence is longer than subject: 320 - 231

Fln protein: MSLKSHRDGVGPSRCCSVRVKIFTDPSLLSRGRLEQEKNKWLDEYGVPPGNSTDQDLWDSGRVPSVKAMSEEERQDYEEKKLKLRKAMGENLYDEVEGEDEESSIRRLNLLRATEGDDWSGVIDRQTKETMDEKCEGTQINNNNKQTNTGTVSPFSDNGSGTSGLYSAVTRDLTPENVDLVLNDVRPYLVADGGNVEVASVEDGVISLRLQGACGTCPSSTTTMKMGIERVLKEKFGDALKEIRQVDQQNIHATVVSVNSHLDMLRPAIHNYGGSVEVTSIEGEICHVKYDGPDQIGVGIQAAIKDKFPEITKVVLSNP*

Protein Length: 321

Fln nts: CGGGACTGTCTATCTTTCCAGTTGCATCCCCACAGTGTCTCATGGTCTCTGCTGGTGCTGATGGCATCTCTTCTCGCATTTAGATTCCTTTCAATCCCACACCAGTCGACCTCTACAATTCCACTTCAGTCTGCTGCCATAAAAATCCAATTCGTCATACCTATGCCTGCTCAAGCTCTCTACCCAAATCAGCAAATCTAAAGGCTACCCATGCCCAAACTCCATCCATAAATTCGTTATCCACTGTAGTGACGGATGAATCTGTACCAGAGGGCCATGCGGGCCTTCATGGCTTCCTCTACGGGGAAAAGGGCTCTGAACTTCATGGCTCACAAACACAGCAAATCACAGCGAAACCAGGTGAAGACGATGGCTCTTCCATCATCCCCTTCGAAGACTATGTCAATACCAGGGGGAATTTTAAGTTTACTGGTGTGTATGCAATCTACAATAAGGAGGACCAAATTCAGTATGTGGGCTATTCCAGGAATGTGATC_-_ATGTCCTTAAAATCCCACAGGGACGGGGTTGGCCCATCGAGGTGCTGTTCAGTGAGAGTGAAAATCTTCACAGATCCATCACTTCTATCCAGAGGAAGATTAGAACAAGAGAAAAACAAGTGGCTTGATGAATATGGTGTACCGCCAGGGAATTCAACTGATCAAGACTTATGGGATAGTGGGCGGGTGCCGTCCGTTAAGGCCATGTCTGAAGAGGAGAGGCAGGACTACGAGGAGAAAAAATTGAAGTTGAGAAAGGCAATGGGTGAGAATTTGTATGATGAAGTTGAGGGAGAGGATGAGGAGTCCAGCATTAGGAGGCTTAATCTTCTGAGGGCCACGGAAGGAGATGATTGGAGTGGTGTAATTGACCGGCAGACCAAAGAAACCATGGACGAAAAGTGTGAAGGAACCCAAATTAATAATAATAACAAACAAACAAACACAGGAACTGTGAGTCCTTTCAGCGACAATGGCAGTGGCACATCAGGGCTTTATTCCGCTGTTACCCGTGATCTAACGCCAGAAAATGTGGATTTAGTTCTTAATGATGTTCGGCCTTATCTTGTAGCTGATGGTGGCAACGTTGAAGTGGCTTCTGTTGAGGACGGCGTCATCTCCTTGAGGCTTCAAGGAGCATGTGGGACATGTCCTAGCTCTACCACTACAATGAAAATGGGGATTGAAAGGGTTCTGAAGGAGAAATTTGGAGATGCATTAAAAGAGATCCGTCAAGTTGATCAGCAAAACATCCATGCAACAGTAGTGTCTGTTAATTCTCACTTGGATATGCTGAGGCCGGCGATACATAATTATGGTGGCTCAGTGGAAGTGACTTCTATTGAAGGTGAAATTTGTCACGTGAAATACGATGGTCCAGATCAAATCGGTGTGGGTATTCAAGCTGCCATCAAAGATAAATTTCCTGAAATAACAAAAGTAGTTTTGTCCAATCCTTGA___GAGTTAAATAATGATGTGATGGTAAATAAGCTTGAACAAATTTTAGCAAAGCAGCATGGGCCCCATCCTCAATGCCTTGAAGTATTGCAAAAAGGTAGAATGCTAGACTGCTATTTCGGTGTACATGATACATGGCTCTCAGTCTTCGAACTTGTTAGATATATCATCGGAGAAATTTGTACCATGATATTGGAAGGACAA

Fln Alignment:

Contig4889___VSPFSDNGSGTSGLYSAVTRDLTPENVDLVLNDVRPYLVADGGNVEVASVEDGVISLRLQGACGTCPSSTTTMKMGIERVLKEKFGDALKEIRQV-DQQNIHATVVSVNSHLDMLRPAIHNYGGSVEVTSIEGEICHVKYDGPDQIGVGIQAAIKDKFPEITKVVLSN
Q93W77_________________ISPLASGVS--SGLYSAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDEEVKQITVEAVNAHLDILRPAIKNYGGSVEVLSVEGEDCVVKYVGPESIGMGIQAAIKEKFKDISNVTFTS

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
133	33		66		0.997452
137			66	33	0.997452
214	25		75		0.996473
216		75		25	0.996473
217	75		25		0.996473
218	75			25	0.996473
460			16	83	0.994512
514	14	85			0.993533
592	12		87		0.992554
593	12	87			0.992554
595	87		12		0.992554
596		85		14	0.993533
664	12		87		0.992554
665	87	12			0.992554
668	87			12	0.992554
721	12			87	0.992554
722	12			87	0.992554
730	16			83	0.994512
731		16		83	0.994512
732	16		83		0.994512
785	20			80	0.995493
788			80	20	0.995493
999	11	88			0.923564
1000	11			88	0.923564
1040	88			11	0.923564
1041			88	11	0.923564
1108	11			88	0.923564
1109		88		11	0.923564
1165			88	11	0.923564
1202	16			83	0.994512
1204	16	83			0.994512
1206		83		16	0.994512
1265		14		85	0.993533
1266	14	85			0.993533
1575	66	33			0.997452
1577			66	33	0.997452
1578			66	33	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
717	732	TGTT TGTT TGTT TGTT	16
731	742	TTA TTA TTA TTA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain