SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4884

Length: 230 nt

UniGene Fasta

>biog3_v1.0_unigene4884
AATGTAACGGGAAATTCACCAAGGCCATCGAGGTTTATGTCGATTTAAGCGATAAGGTGGTGGGTTTAGGTGTGCGAATGCGCAGGTACTCATTACTGGTGGGCAATGGGGTCGTTAAAATGCTCAATTTAGAGTAAGGCAGGTTGTTTACCTTCAGCGGGGTCGATGATATATTGAAGGCCATGTGAGCTTTCGTAGGGTTTGAGATCTGTGGGTTAAGCTTCAGCGGG

Ace file of the UniGene biog3_v1.0_unigene4884

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24490	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxiredoxin, putative n=1 Tax=Ricinus communis RepID=B9SRG0_RICCO	-	-	6.0e-30	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	protein	-	-	7.07514e-35	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	7.07514e-35	73%

Source	InterPros	Term	Type	Identity
Sma3		IPR012335	-	-
Sma3	Redoxin	IPR013740	-	-
Sma3		IPR017936	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN26

Fln msg: your sequence is shorter than subject: 62 - 239

Fln protein: CNGKFTKAIEVYVDLSDKVVGLGVRMRRYSLLVGNGVVKMLNLE*GRLFTFSGVDDILKAM*

Protein Length: 63

Fln nts: AATGTAACGGGAAATTCACCAAGGCCATCGAGGTTTATGTCGATTTAAGCGATAAGGTGGTGGGTTTAGGTGTGCGAATGCGCAGGTACTCATTACTGGTGGGCAATGGGGTCGTTAAAATGCTCAATTTAGAGTAAGGCAGGTTGTTTACCTTCAGCGGGGTCGATGATATATTGAAGGCCATGTGA___GCTTTCGTAGGGTTTGAGATCTGTGGGTTAAGCTTCAGCGGG

Fln Alignment:

Contig4884___KFTKAIEVYVDLSDKVVGLGVRMRRYSLLVGNGVVKMLNLE*GRLFTFSGVDDILKAM
A9NN26_________________EFTKALGVTLDLSDKPVGLGVRSRRYALLAEDGVVKVLNLEEGGAFTVSSAEDILKAL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
18	75		25		0.996473
19		75		25	0.996473
135			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain