SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4816

Length: 2317 nt

UniGene Fasta

>biog3_v1.0_unigene4816
AATGTGACATTCTAGTTTCAAGGTTTCTTCTGGTGATATTCAGTCACCATAACTGCAGCAGGAGTATTGAACAAAGGCTATAAAGAATATATGTAGCAGTGAAATTTTAGATCAGGATGCTTAAAGAAAGCTTATTTTGATTTGCTGCTTGAGGTTGGAATCTTTGAAATGGTAGTTCTGTTAATGGTTGGAGAGTTGCTTATGGAGTTTGTACAATAGTAGCTAGGAGCCTTCAGCTTTGAGACAGACATCCTGGAGAAATGTCCAACATGCATGGGGCTACGACATCAGATGTTGAACGTGCAGAGGAAATAAAGGCTATTGCTAATGCAGCATTTCAAGCTCACAAATTTTCCCGAGCCATAGAGCTCTATTCTGAAGCCATTGAGTTGAACAGTCAGAATGCAGTTTATTGGGCAAATCGTGCATTTGCACATACAAAGTTGGAGGAGTATGGAAGTGCTATTCAGGATGCAACAAAAGCTGTTGAAATTGATCCTAAATATACGAAGGGGTACTACCGGAGAGGTGCTGCATATCTAGCCATGGGCAAATTCAAGGAAGCACTAAAAGATTTTCAGCAGGTTAAGAGAATTTGTCCAAATGATCCTGATGCGACCAAGAAGCTTAAAGAAGCCGAGAAAGCAGTCCAAAAACTTAGATTTATTGAGGCCATCTCAGTGAATGATCTTGAGAATCATTCTGTTGTTGAGTCCATCGATTTTCGTTCAATAGAGGTAGAGCCACAGTATGCTGGTGCTAGAATAGAAGGAGAAAATGTAACATTGGAATTTATAAAGCAAATGATGGATGAGTTCAAGAATCAGAAAAATATACACAGAAGGTATGCATTTCAAATATTATTGCAAGTAAAGGATTTGCTGGAGGTGATGCCATCACTGGTTGACATTAATATTCCAAACGGAAAGCAATTCACTGTTTGTGGTGACATCCATGGTCAGTATTATGACCTTTTGAACATCTTTGAGATTAATGGGCTTCCTTCAGAGGACAATCCTTATCTTTTTAATGGTGATTTTGTTGATCGAGGATCATTTTCAGTTGAAGTCATACTTGTGCTATTCGCATTCAAGTGTATGTGTCCAACTGGACTCTATCTTGCAAGAGGAAATCATGAAAGCAGGAGTATGAACAAGATTTATGGTTTTGAGGGTGAAGTCAAATCCAAGTACAGTGAAAGCATGGTTGAGCTTTTCGCTGAAGTGTTTTGCTGCTTGCCTTTGGCTCATGTCCTCAATGACAAGATTTTTGTTGTCCATGGTGGTCTTTTTAGTGTTGATGGTATAAAACTTGATGATATCAAAGCAATTGATCGATTCCGAGAGCCACCTGAAGAGGGTCTGATGTGTGAAATACTTTGGAGTGATCCACAGCCTCGTAAAGGGCGTGGGCCCAGCAAACGAGGTGTTGGTTTGTCTTTTGGAGAAGATGTGACCAAAAGGTTTCTCCAAGAAAACAATCTTGAGCTGGTGGTCAGGTCTCATGAAGTTAAAGAGGAAGGTTATGAAATTGAACATGATGGCAAACTTATTACGGTTTTCTCAGCTCCAAACTACTGTGACCAGATGGGTAACAAGGGTGCGTTCATAAGGTTTAAGGCCCCAGAACTCAAGCCAGAAATTATCTCATTTTCTGCTGTGCCACATCCTGATGTAAGGCCCATGGCATATGCAAATAATTTCCTGAGGCTTTTCTCCTAATCACCGGAAGGTTTATTTAAGTGTTTGAACACATCGGCACCAGAAGGTTTATTCTCGAGGTTGAACACTTCCGTGTTCCTCTTTTAGATGACTGATGAATCCAAGATATTAATTTATTGTGTGTCCACTTCTTGGTAACACTAGAGATATTTCTATCACTTGATATTTAAGGATAACATTGTGCATGCTTGCTCTTGTTCAGTAAAGGTCAGGGGGTTGAATGATTTGCAGAAGTCATTTAAGAAAATCTATGCTTATTGACTGCTGTCCTGAATTCTCTGGTTGCTTATATTATTGGTGTCTGTTGCTGGAGGTTGTTAAAAGGACTCATGATCTGTTGTCATGTAATATTACATTGAATAATACGGTCATTTTTCCAGGTCCCATATTCCTAAAATTTGTTGGGATGTTCGGACCTGAGGCAGGCATGCACTCGATTGTAAATTCATTTTGGAAATGTTCATTTTTCTTCCCTTTGAGGTGTTTTCAAAATGAGATATATTTCTGCTATTTGCGGACGAGGGTCCCTGTATATGCTGTGGGAAATCTTTAGCAGGTAGTTGGGTGGGCGGGCACGTCTGTTCCTTATTTCTGGC

Ace file of the UniGene biog3_v1.0_unigene4816

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9023	55/56

Source	Descriptions	Term	Type	Identity
AutoFact	Isoform 2 of Serine/threonine-protein phosphatase 5 n=1 Tax=Solanum lycopersicum RepID=Q84K11-2	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	serine threonine-protein phosphatase 5	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	86%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	86%
Blast2go	nucleocytoplasmic transport	GO:0006913	Biological Process	86%
Blast2go	red or far-red light signaling pathway	GO:0010017	Biological Process	86%
Blast2go	phospholipase C activity	GO:0004629	Molecular Function	86%
Blast2go	metal ion binding	GO:0046872	Molecular Function	86%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	86%
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	integral to endoplasmic reticulum membrane	GO:0030176	Cellular Component	86%
Blast2go	nuclear membrane	GO:0031965	Cellular Component	86%
Blast2go	nuclear speck	GO:0016607	Cellular Component	86%
Blast2go	intracellular signal transduction	GO:0035556	Biological Process	86%

Source	InterPros	Term	Type	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	PPP domain	IPR013235	-	-
Sma3	Protein phosphatase 5	IPR011236	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRV6

Fln msg:

Fln protein: MSNMHGATTSDVERAEEIKAIANAAFQAHKFSRAIELYSEAIELNSQNAVYWANRAFAHTKLEEYGSAIQDATKAVEIDPKYTKGYYRRGAAYLAMGKFKEALKDFQQVKRICPNDPDATKKLKEAEKAVQKLRFIEAISVNDLENHSVVESIDFRSIEVEPQYAGARIEGENVTLEFIKQMMDEFKNQKNIHRRYAFQILLQVKDLLEVMPSLVDINIPNGKQFTVCGDIHGQYYDLLNIFEINGLPSEDNPYLFNGDFVDRGSFSVEVILVLFAFKCMCPTGLYLARGNHESRSMNKIYGFEGEVKSKYSESMVELFAEVFCCLPLAHVLNDKIFVVHGGLFSVDGIKLDDIKAIDRFREPPEEGLMCEILWSDPQPRKGRGPSKRGVGLSFGEDVTKRFLQENNLELVVRSHEVKEEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFKAPELKPEIISFSAVPHPDVRPMAYANNFLRLFS*

Protein Length: 488

Fln nts: AATGTGACATTCTAGTTTCAAGGTTTCTTCTGGTGATATTCAGTCACCATAACTGCAGCAGGAGTATTGAACAAAGGCTATAAAGAATATATGTAGCAGTGAAATTTTAGATCAGGATGCTTAAAGAAAGCTTATTTTGATTTGCTGCTTGAGGTTGGAATCTTTGAAATGGTAGTTCTGTTAATGGTTGGAGAGTTGCTTATGGAGTTTGTACAATAGTAGCTAGGAGCCTTCAGCTTTGAGACAGACATCCTGGAGAA_-_ATGTCCAACATGCATGGGGCTACGACATCAGATGTTGAACGTGCAGAGGAAATAAAGGCTATTGCTAATGCAGCATTTCAAGCTCACAAATTTTCCCGAGCCATAGAGCTCTATTCTGAAGCCATTGAGTTGAACAGTCAGAATGCAGTTTATTGGGCAAATCGTGCATTTGCACATACAAAGTTGGAGGAGTATGGAAGTGCTATTCAGGATGCAACAAAAGCTGTTGAAATTGATCCTAAATATACGAAGGGGTACTACCGGAGAGGTGCTGCATATCTAGCCATGGGCAAATTCAAGGAAGCACTAAAAGATTTTCAGCAGGTTAAGAGAATTTGTCCAAATGATCCTGATGCGACCAAGAAGCTTAAAGAAGCCGAGAAAGCAGTCCAAAAACTTAGATTTATTGAGGCCATCTCAGTGAATGATCTTGAGAATCATTCTGTTGTTGAGTCCATCGATTTTCGTTCAATAGAGGTAGAGCCACAGTATGCTGGTGCTAGAATAGAAGGAGAAAATGTAACATTGGAATTTATAAAGCAAATGATGGATGAGTTCAAGAATCAGAAAAATATACACAGAAGGTATGCATTTCAAATATTATTGCAAGTAAAGGATTTGCTGGAGGTGATGCCATCACTGGTTGACATTAATATTCCAAACGGAAAGCAATTCACTGTTTGTGGTGACATCCATGGTCAGTATTATGACCTTTTGAACATCTTTGAGATTAATGGGCTTCCTTCAGAGGACAATCCTTATCTTTTTAATGGTGATTTTGTTGATCGAGGATCATTTTCAGTTGAAGTCATACTTGTGCTATTCGCATTCAAGTGTATGTGTCCAACTGGACTCTATCTTGCAAGAGGAAATCATGAAAGCAGGAGTATGAACAAGATTTATGGTTTTGAGGGTGAAGTCAAATCCAAGTACAGTGAAAGCATGGTTGAGCTTTTCGCTGAAGTGTTTTGCTGCTTGCCTTTGGCTCATGTCCTCAATGACAAGATTTTTGTTGTCCATGGTGGTCTTTTTAGTGTTGATGGTATAAAACTTGATGATATCAAAGCAATTGATCGATTCCGAGAGCCACCTGAAGAGGGTCTGATGTGTGAAATACTTTGGAGTGATCCACAGCCTCGTAAAGGGCGTGGGCCCAGCAAACGAGGTGTTGGTTTGTCTTTTGGAGAAGATGTGACCAAAAGGTTTCTCCAAGAAAACAATCTTGAGCTGGTGGTCAGGTCTCATGAAGTTAAAGAGGAAGGTTATGAAATTGAACATGATGGCAAACTTATTACGGTTTTCTCAGCTCCAAACTACTGTGACCAGATGGGTAACAAGGGTGCGTTCATAAGGTTTAAGGCCCCAGAACTCAAGCCAGAAATTATCTCATTTTCTGCTGTGCCACATCCTGATGTAAGGCCCATGGCATATGCAAATAATTTCCTGAGGCTTTTCTCCTAA___TCACCGGAAGGTTTATTTAAGTGTTTGAACACATCGGCACCAGAAGGTTTATTCTCGAGGTTGAACACTTCCGTGTTCCTCTTTTAGATGACTGATGAATCCAAGATATTAATTTATTGTGTGTCCACTTCTTGGTAACACTAGAGATATTTCTATCACTTGATATTTAAGGATAACATTGTGCATGCTTGCTCTTGTTCAGTAAAGGTCAGGGGGTTGAATGATTTGCAGAAGTCATTTAAGAAAATCTATGCTTATTGACTGCTGTCCTGAATTCTCTGGTTGCTTATATTATTGGTGTCTGTTGCTGGAGGTTGTTAAAAGGACTCATGATCTGTTGTCATGTAATATTACATTGAATAATACGGTCATTTTTCCAGGTCCCATATTCCTAAAATTTGTTGGGATGTTCGGACCTGAGGCAGGCATGCACTCGATTGTAAATTCATTTTGGAAATGTTCATTTTTCTTCCCTTTGAGGTGTTTTCAAAATGAGATATATTTCTGCTATTTGCGGACGAGGGTCCCTGTATATGCTGTGGGAAATCTTTAGCAGGTAGTTGGGTGGGCGGGCACGTCTGTTCCTTATTTCTGGC

Fln Alignment:

Contig4816___MSNMHGATTSDVERAEEIKAIANAAFQAHKFSRAIELYSEAIELNSQNAVYWANRAFAHTKLEEYGSAIQDATKAVEIDPKYTKGYYRRGAAYLAMGKFKEALKDFQQVKRICPNDPDATKKLKEAEKAVQKLRFIEAISVNDLENHSVVESIDFRSIEVEPQYAGARIEGENVTLEFIKQMMDEFKNQKNIHRRYAFQILLQVKDLLEVMPSLVDINIPNGKQFTVCGDIHGQYYDLLNIFEINGLPSEDNPYLFNGDFVDRGSFSVEVILVLFAFKCMCPTGLYLARGNHESRSMNKIYGFEGEVKSKYSESMVELFAEVFCCLPLAHVLNDKIFVVHGGLFSVDGIKLDDIKAIDRFREPPEEGLMCEILWSDPQPRKGRGPSKRGVGLSFGEDVTKRFLQENNLELVVRSHEVKEEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFKAPELKPEIISFSAVPHPDVRPMAYANNFLRLFS
B8LRV6_________________MSNMHGAMTSDIERAEEIKAIANAAFQAHKFSRAIELYSQAIELNSQNAVYWANRAFAHTKLEEYGSAIQDATTAVEIDAKYTKGYYRRGAAYLAMGKFKEALKDFQQVKKICPNDPDATKKLKECEKAVQKLRFIEAISVNDLENHSVVDSIDFRSIEVEPQYAGARIEGENVTLEFIKKMMDDFKNQKNIHKRYAFQILLQVRDLLEVMPSLIDISVPNGKQFTVCGDIHGQYYDLLNIFEINGLPSEDNPYLFNGDFVDRGSFSVEVILVLFAFKCMCPTGLYLSRGNHESRSMNKIYGFEGEVKSKYNESMVELFAEVFCCLPLAHVLNDKIFVVHGGLFSVDGVKLDDIRAINRFREPPEEGLMCEILWSDPQPRKGRGPSKRGVGLSFGEDVTKRFLQENNLELVVRSHEVKEEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFKAPELKPEIISFSAVPHPDVRPMAYANNFLRLFS

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
43	33		66		0.997452
46		66		33	0.997452
629		20	80		0.995493
630	20	80			0.995493
705	20			80	0.995493
706	40	60			1.0
707		20		80	0.995493
708	20		80		0.995493
856	16			83	0.994512
857	16			83	0.994512
859		66	16		0.988813
860	83			16	0.994512
861	83	16			0.994512
1100	14		85		0.993533
1101		14		85	0.993533
1228	14		85		0.993533
1229		14		85	0.993533
1230	14		85		0.993533
1249	16		83		0.994512
1252		83		16	0.994512
1274	40			60	1.0
1275		40		60	1.0
1276	40		60		1.0
1957		75		25	0.996473
1973	75			25	1.0
2050	85		14		0.993533
2051	80		20		0.995493
2081	50			25	0.995533
2083	50			25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain