SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4731

Length: 411 nt

UniGene Fasta

>biog3_v1.0_unigene4731
ACTCGGAAAAGAGAAGCGGAAGTAAATTCGGGCAAAAATGGCTTCTTTATACTTTCATTGCATTACAAATCCTCAGGAGCATTTGTTAGGCCGTTCCCTGTTTGAATCTAGGGAGTCCCAGAAATCGTCGTTGCTCCAAGGACGCTATTGCAATCCCAGAGTTTCGGAGTTTAGAAACCCTAGCGGGGGTTTACGCCATGGAAAACGTGAAGGTCGGTTGAGAATATCTGCTTGCATTGCCACGGATGCTGCAGAGAGGACTTCTGTAGTGAATGGGGTAGGCGTAGACTTAGGGTTTGATAGGAGCAGCAGTGGTGTTATCGAAGCTGAAAGGAAGTATTTCGTGGGGAATTATGCTAGGTCGCCTGCTGTTTTTGTGAAGGGAGAGGGTTGTAAATTATATGATACATT

Ace file of the UniGene biog3_v1.0_unigene4731

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene52	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Acetylornithine aminotransferase, mitochondrial; Short=ACOAT; AltName: Full=Acetylornithine transaminase; Short=AOTA; Flags: Precursor emb\|CAA69936.1\| acetylornithine aminotransferase [Alnus glutinosa]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	39%
Blast2go	protein	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acetylornithine transaminase.	EC:2.6.1.11	-	0.0	79%

Source	KEGGs	Term	Identity
Blast2go	Lysine biosynthesis	00300	79%
Blast2go	Arginine and proline metabolism	00330	79%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	79%
Blast2go	Metabolic pathways	01100	79%
Blast2go	Biosynthesis of secondary metabolites	01110	79%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	79%
Blast2go	arginine biosynthetic process	GO:0006526	Biological Process	79%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	79%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	79%
Blast2go	transcription initiation, DNA-dependent	GO:0006352	Biological Process	79%
Blast2go	cutin biosynthetic process	GO:0010143	Biological Process	79%
Blast2go	wax metabolic process	GO:0010166	Biological Process	79%
Blast2go	interspecies interaction between organisms	GO:0044419	Biological Process	79%
Blast2go	ethylene mediated signaling pathway	GO:0009873	Biological Process	79%
Blast2go	copper ion binding	GO:0005507	Molecular Function	79%
Blast2go	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	GO:0003992	Molecular Function	79%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	79%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	79%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	79%
Blast2go	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Acetylornithine/Succinylornithine aminotransferase	IPR004636	-	-
Sma3	Aminotransferase class-III	IPR005814	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6HXR4

Fln msg: Distance to subject end: 370 aas, your sequence is shorter than subject: 124 - 463

Fln protein: MASLYFHCITNPQEHLLGRSLFESRESQKSSLLQGRYCNPRVSEFRNPSGGLRHGKREGRLRISACIATDAAERTSVVNGVGVDLGFDRSSSGVIEAERKYFVGNYARSPAVFVKGEGCKLYDT

Protein Length: 125

Fln nts: ACTCGGAAAAGAGAAGCGGAAGTAAATTCGGGCAAAA_-_ATGGCTTCTTTATACTTTCATTGCATTACAAATCCTCAGGAGCATTTGTTAGGCCGTTCCCTGTTTGAATCTAGGGAGTCCCAGAAATCGTCGTTGCTCCAAGGACGCTATTGCAATCCCAGAGTTTCGGAGTTTAGAAACCCTAGCGGGGGTTTACGCCATGGAAAACGTGAAGGTCGGTTGAGAATATCTGCTTGCATTGCCACGGATGCTGCAGAGAGGACTTCTGTAGTGAATGGGGTAGGCGTAGACTTAGGGTTTGATAGGAGCAGCAGTGGTGTTATCGAAGCTGAAAGGAAGTATTTCGTGGGGAATTATGCTAGGTCGCCTGCTGTTTTTGTGAAGGGAGAGGGTTGTAAATTATATGATACATT

Fln Alignment:

Contig4731___PRVSEFRNPSGGLRHGKREGRLRISACIATDAAERTSVVNGVGVDLGFDRSSSGVIEAERKYFVGNYARSPAVFVKGEGCKLYD
F6HXR4_________________PSASDLRHSFSGLSGSSNGGRA--IACVKVGVQAPGSGDSG---KMGFRGASKEVMEAEGRLMVGTYARAPVVISHGEGCKLYD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
331			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain