SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4667

Length: 887 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4667 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene685	3/5
SustainPine v2.0	sp_v2.0_unigene35102	2/5

Source	Descriptions	Term	Type	Identity
AutoFact	transcription initiation factor TFIIE alpha subunit [Arabidopsis thaliana] gb\|AAL07078.1\| unknown protein [Arabidopsis thaliana] gb\|AAM20302.1\| unknown protein [Arabidopsis thaliana] gb\|AAR28007.1\| TFIIE-alpha 1 [Arabidopsis thaliana] gb\|AEE27553.1\| trans	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	general transcription factor iie subunit 1-like	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	75%
Blast2go	transcription initiation from RNA polymerase II promoter	GO:0006367	Biological Process	75%
Blast2go	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	75%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	75%
Blast2go	transcription factor TFIIE complex	GO:0005673	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor TFE/TFIIEalpha HTH domain	IPR017919	-	0.0	-
Sma3	Transcription factor TFIIE, alpha subunit	IPR002853	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLR7

Fln msg: Distance to subject end: 214 aas, your sequence is shorter than subject: 266 - 480

Fln protein: MSAEPFKRLVRLVARAFYDDIPTRAENQPKSGRSDNRGMAVVVLDALTRRQWVKEDDLAKDLKLHSKQLRRTLRFFEEERLITRDHRRETAKGAKVFNAAIAATADGQQNGKEGEEKLKLHTHSYCCLDYAQTYDVVRYRIHRMKKRLKDELEDRNTLQEYICPNCSRRYSALDALQLISFTEDSFHCENCNAELVAESDKLAAEEKGDGEDNGRRRRREKLKELLEKMEVQLKPLMEQLTRVKDLAVPEFGSLLQWEARAIAAGR

Protein Length: 267

Fln nts: AATGTAAATCAACAGAGTCAGGTCACATAAAACTCAACGGAGCTGAATGTTTTAAATTTGAAGGCCAGCATTTTATTCCTGTAAACATC_-_ATGAGTGCTGAACCTTTCAAGCGGTTGGTAAGGCTTGTTGCAAGGGCCTTCTATGATGATATCCCTACAAGAGCAGAAAATCAACCGAAATCTGGCAGGAGCGATAACAGAGGAATGGCAGTTGTGGTCCTTGATGCTTTAACAAGGCGACAATGGGTTAAAGAAGATGATTTGGCTAAGGATTTAAAGCTACACTCAAAACAACTTAGACGTACCTTGCGATTTTTTGAAGAGGAGAGGCTAATTACTAGAGATCATCGTCGTGAGACTGCAAAGGGAGCTAAAGTTTTCAATGCTGCAATAGCAGCTACTGCAGATGGTCAACAAAATGGGAAAGAGGGTGAAGAAAAGCTGAAACTCCATACACATTCTTACTGTTGTTTAGATTATGCACAGACTTACGATGTTGTCAGATACAGAATTCATCGGATGAAGAAAAGACTGAAAGATGAACTAGAGGACAGGAATACACTTCAGGAATATATCTGCCCTAATTGTAGTCGCAGGTATTCAGCCTTGGATGCACTGCAACTGATCAGCTTTACTGAGGATAGTTTTCATTGTGAAAACTGCAATGCCGAACTTGTTGCTGAAAGTGACAAGCTAGCAGCAGAGGAAAAGGGTGATGGAGAAGATAATGGTAGGCGCCGTCGGCGTGAAAAGTTGAAGGAACTGCTTGAAAAAATGGAGGTACAGCTTAAGCCATTAATGGAGCAGTTAACAAGAGTAAAAGATTTAGCTGTCCCTGAATTTGGAAGTCTCCTCCAATGGGAGGCTAGGGCAATTGCTGCTGGGCGT

Fln Alignment:

Contig4667___MSAEPFKRLVRLVARAFYDDIPTRAENQPKSGRSDNRGMAVVVLDALTRRQWVKEDDLAKDLKLHSKQXXXXXXXXXXXXLITRDHRRETAKGAKVFNAAIAATADGQQNGKEGEEKLKLHTHSYCCLDYAQTYDVVRYRIHRMKKRLKDELEDRNTLQEYICPNCSRRYSALDALQLISFTEDSFHCENCNAELVAESDKLAAEEKGDGEDNGXXXXXXXXXXXXXKMEVQLKPLMEQLTRVKDLAVPEFGSLLQWEARAIAAGR
B8LLR7_________________MSAEPFKRLVRLVARAFYDDTTTRAENQPKSGRSDNRGMAVVVLDALTRRQWVKEDDLAKDLKLHSKQLRRTLRFFEEERLITRDHRRETAKGAKVFNAAIAATADGQQNGKEGEEKLKLHTHSYCCLDYAQTYDVVRYRIHRMKKRLKDELEDRNTLQEYICPNCNRRYSALDALQLISFTEDSFHCENCNSELVAESDKLAAEEKGDGEDNGRRRRREKLKELLEKMEVQLKPLMEQLTRVKDLPVPEFGSLLQWEARAIAAGR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
597	25			75	0.996473
598	25		75		0.996473
600			25	75	0.996473
645		80		20	0.995493
700	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain