SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4642

Length: 441 nt

UniGene Fasta

>biog3_v1.0_unigene4642
CATGTGCAAGAGTACAATTTTGATCACCCAGATGCCTTTGACACTGAACAACTTCTTGACTGTATCAATCAGTTGAAGCAGAGTGAATCTGTGCATATTCCTATTTATGATTTCAAGCATCATCGTCGTAGTACAGATGCCTTTCGCAAGGTGAATCCATCAGATGTCATTATTTTAGAGGGAATTTTAGTATTTCATGATCCTCGTGTCCGGGAAATGATGAACATGAAGATCTTTGTTGACACAGATGCTGATGTAAGGCTGGCTAGGAGGATAAGACGTGACACAGTTGAGAGAGGTAGAGATGTGAATTCTGTTCTTGAGCAGTATGCCAAGTTCGTTAAGCCAGCTTTTGATGATTTTGTACTACCATCAAAAAAGTATGCTGATGTTATTATCCCCCGAGGGGGAGACAACCATGTTGCAATAAATCTTAACATT

Ace file of the UniGene biog3_v1.0_unigene4642

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2641	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Uridine kinase n=1 Tax=Ricinus communis RepID=B9S674_RICCO	-	-	75%
FL-Next	sp=Phosphoribulokinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	uracil phosphoribosyltransferase	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Uracil phosphoribosyltransferase.	EC:2.4.2.9	-	0.0	95%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyrimidine metabolism	00240		95%
Blast2go	Metabolic pathways	01100		95%
Blast2go	Uridine kinase.	EC:2.7.1.48	-	95%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyrimidine metabolism	00240		95%
Blast2go	Drug metabolism - other enzymes	00983		95%
Blast2go	Metabolic pathways	01100		95%
Blast2go	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	95%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	95%
Blast2go	Lipopolysaccharide biosynthesis	00540	95%
Blast2go	Nicotinate and nicotinamide metabolism	00760	95%
Blast2go	Metabolic pathways	01100	95%

Source	GOs	Term	Type	Identity
Blast2go	UMP biosynthetic process	GO:0006222	Biological Process	95%
Blast2go	phosphorylation	GO:0016310	Biological Process	95%
Blast2go	uracil phosphoribosyltransferase activity	GO:0004845	Molecular Function	95%
Blast2go	uridine kinase activity	GO:0004849	Molecular Function	95%
Blast2go	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	95%
Blast2go	ATP binding	GO:0005524	Molecular Function	95%
Blast2go	cytoplasm	GO:0005737	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Sma3	Uridine kinase	IPR000764	-	-
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Dephospho-CoA kinase	IPR001977	-	-
Sma3	Phosphoribulokinase/uridine kinase	IPR006083	-	-
Sma3	Protein of unknown function DUF1296	IPR009719	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVC2

Fln msg: Distance to subject end: 140 aas, your sequence is shorter than subject: 147 - 400

Fln protein: HVQEYNFDHPDAFDTEQLLDCINQLKQSESVHIPIYDFKHHRRSTDAFRKVNPSDVIILEGILVFHDPRVREMMNMKIFVDTDADVRLARRIRRDTVERGRDVNSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAINLNI

Protein Length: 148

Fln nts: CATGTGCAAGAGTACAATTTTGATCACCCAGATGCCTTTGACACTGAACAACTTCTTGACTGTATCAATCAGTTGAAGCAGAGTGAATCTGTGCATATTCCTATTTATGATTTCAAGCATCATCGTCGTAGTACAGATGCCTTTCGCAAGGTGAATCCATCAGATGTCATTATTTTAGAGGGAATTTTAGTATTTCATGATCCTCGTGTCCGGGAAATGATGAACATGAAGATCTTTGTTGACACAGATGCTGATGTAAGGCTGGCTAGGAGGATAAGACGTGACACAGTTGAGAGAGGTAGAGATGTGAATTCTGTTCTTGAGCAGTATGCCAAGTTCGTTAAGCCAGCTTTTGATGATTTTGTACTACCATCAAAAAAGTATGCTGATGTTATTATCCCCCGAGGGGGAGACAACCATGTTGCAATAAATCTTAACATT

Fln Alignment:

Contig4642___PDAFDTEQLLDCINQLKQSESVHIPIYDFKHHRRSTDAFRKVNPSDVIILEGILVFHDPRVREMMNMKIFVDTDADVRLARRIRRDTVERGRDVNSVLEQYAKFVKPAFDDFVLPSKKYADVII
A9NVC2_________________PRANNFDLMYEQVKALKEGKSVMKPIYN--HVTGILDPAEQINPPKILVIEGLHPMFDARVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESI-KASIQARKPDFDAFIDPQKQYADVVI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
356	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain