SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4595

Length: 391 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene4595
AATGTATTGTTGTAGTTGCAGCTTGCACCATACTGGCGATGATTGCTTCACTTCCTCTTGGGCAACTATTCTTCTTCCACGTTCTGCTCATGAAAAGGGCATCAGTACTTACGATTACATTATAGCAATGAGGGAACAAGAACAGCAAGCTATGGAAGGAATACAGAGCCCTCAGATGTCCCCTGTAAGCTCTGCTACAGTAATGAGCAGTGTCTTCTCTTGAGGCGGGGAGTAGGAATGCAAAAAGGAAGCAAGGTGAAAGAGCAAGACAAAGGAACAGTGGATCAGTGAAGATAAGCCCCTGGACCCTGGCTCGTTTGAATGCTGAAGAGGTGTCAAAGGCAGCTGCCCAAGACAAGGCAAAAGTCAAAAGTTCTGCTGCCGATACATT

Ace file of the UniGene biog3_v1.0_unigene4595 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6590	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S925_RICCO	-	-	67%
FL-Next	sp=Probable S-acyltransferase At1g69420; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	probable s-acyltransferase at1g69420-like	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	endomembrane system	GO:0012505	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3	Chaperonin Cpn60	IPR001844	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peroxisome biogenesis factor 1, N-terminal	IPR015342	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C533

Fln msg: Overlapping hits, possible frame ERROR between 98 and 92, Unexpected STOP codon at 3' end. Distance to subject end: 180 aas, your sequence is shorter than subject: 109 - 596

Fln protein: CIVVVAACTILAMIASLPLGQLFFFHVLLxxxxISTYDYIIAMREQEQQAMEGIQSPQMSPVSSATVMSSVFS*GGE*ECKKEAR*KSKTKEQWISEDKPLDPGSFEC*

Protein Length: 110

Fln nts: AATGTATTGTTGTAGTTGCAGCTTGCACCATACTGGCGATGATTGCTTCACTTCCTCTTGGGCAACTATTCTTCTTCCACGTTCTGCTCxxxxxxxxxxxxATCAGTACTTACGATTACATTATAGCAATGAGGGAACAAGAACAGCAAGCTATGGAAGGAATACAGAGCCCTCAGATGTCCCCTGTAAGCTCTGCTACAGTAATGAGCAGTGTCTTCTCTTGAGGCGGGGAGTAGGAATGCAAAAAGGAAGCAAGGTGAAAGAGCAAGACAAAGGAACAGTGGATCAGTGAAGATAAGCCCCTGGACCCTGGCTCGTTTGAATGCTGAAGAGGTGTCAAAGGCAGCTGCCCAAGACAAGGCAAAAGTCAAAAGTTCTGCTGCCGATACATT

Fln Alignment:

Contig4595___IVVVAACTILAMIASLPLGQLFFFHVLLMxxGISTYDYIIAMREQEQ--QAMEGIQSPQMSPVSSATVMSSVFS
Q9C533_________________VIVVGVCTVLAMLATLPLAQLFFFHILLIxxGISTYDYIVALREQEQELEAGGGQQSPQMSMISSFTGLSSASS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
7	33			66	0.997452
8	33	66			0.997452
9			66	33	0.997452
11		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain