SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4592

Length: 716 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4592 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16926	3/16
SustainPine v2.0	sp_v2.0_unigene17237	13/16

Source	Descriptions	Term	Type	Identity
AutoFact	galactokinase [Arabidopsis thaliana] sp\|Q8VYG2.1\|GALAK_ARATH RecName: Full=Galacturonokinase; AltName: Full=D-galacturonic acid-1-P kinase gb\|AAL59925.1\| putative galactokinase [Arabidopsis thaliana] gb\|AAM20366.1\| putative galactokinase [Arabidopsis thal	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	galactokinase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactokinase.	EC:2.7.1.6	-	0.0	72%

Source	KEGGs	Term	Type	Identity
Blast2go	Galactose metabolism	00052		72%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		72%
Blast2go	Metabolic pathways	01100		72%
Blast2go	Galacturonokinase.	EC:2.7.1.44	-	72%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate phosphorylation	GO:0046835	Biological Process	72%
Blast2go	D-galacturonate metabolic process	GO:0046396	Biological Process	72%
Blast2go	galactokinase activity	GO:0004335	Molecular Function	72%
Blast2go	galacturonokinase activity	GO:0047912	Molecular Function	72%

Source	InterPros	Term	Type	Identity
Sma3	Galactokinase	IPR000705	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
397		85	14		0.993533
422	71		28		1.0
475		62		37	1.0
500	85			14	0.993533
501	85			14	0.993533
523	12	87			0.992554
524		87		12	0.992554
525		87	12		0.992554
526			87	12	0.992554
549	12			87	0.992554
551		87		12	0.992554
552	12	75	12		0.975346
553		75		25	1.0
554			87	12	0.992554
645		16		83	0.994512
646	16		83		0.994512
648		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain