SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4591

Length: 482 nt

UniGene Fasta

>biog3_v1.0_unigene4591
ATTGACAAGTACAGAGTGCACACCTGAGTATTGCCCTTGTGGAGATCGCTGCAAAAACCAGCGATTTCAGCGATGTGAATACGTGAAGACAAAATTATTCAAGACAGATGGACGTGGATGGGGTCTTCTCGCAGACCAAGATATCAAGACTGGCCAGTTTGTTATTGAATACTGTGGGGAAGTGATTTCTAGAGAAGAGGCGAGGAGACGATCTCAGGCTTATAGAAGCTGCAGGGTTGAAAGATGCATTTATCATATCTCTTAATAAGTCTGAATTAATTGATGCCACCAGAAAAGGTAGCATTGCTCGATTCATTAACCATTCTTGTGAACCAAATTGTGAAACTCGAAAGTGGACAGTCCTTGGAGAAGGTCGCGTTGGAATTTTTGCAAAGCGGGACATCCCTTGTGGTACAGAGTTATCATATGATTATAAGTTTGAGTTGGTATGGTGGTGCCAAGGTTCGATGTCTATGTGGAGC

Ace file of the UniGene biog3_v1.0_unigene4591

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1781	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	SET domain protein n=1 Tax=Populus trichocarpa RepID=B9H7V1_POPTR	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	histone-lysine n-methyltransferase ashh1-like	-	-	59%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	0.0	59%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lysine degradation	00310		0.0	59%

Source	GOs	Term	Type	Identity
Blast2go	histone lysine methylation	GO:0034968	Biological Process	59%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	59%
Blast2go	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	59%
Blast2go	nucleus	GO:0005634	Cellular Component	59%

Source	InterPros	Term	Type	Identity
Sma3	PWWP	IPR000313	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	AWS	IPR006560	-	-
Sma3	Zinc finger, CW-type	IPR011124	-	-
Sma3	Zinc finger, RING-like	IPR014857	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA49

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 63 aas, putative chimeric sequence, your sequence is shorter than subject: 88 - 332

Fln protein: LTSTECTPEYCPCGDRCKNQRFQRCEYVKTKLFKTDGRGWGLLADQDIKTGQFVIEYCGEVISREEARRRSQAYRSCRVERCIYHIS*

Protein Length: 89

Fln nts: ATTGACAAGTACAGAGTGCACACCTGAGTATTGCCCTTGTGGAGATCGCTGCAAAAACCAGCGATTTCAGCGATGTGAATACGTGAAGACAAAATTATTCAAGACAGATGGACGTGGATGGGGTCTTCTCGCAGACCAAGATATCAAGACTGGCCAGTTTGTTATTGAATACTGTGGGGAAGTGATTTCTAGAGAAGAGGCGAGGAGACGATCTCAGGCTTATAGAAGCTGCAGGGTTGAAAGATGCATTTATCATATCTCTTAA___TAAGTCTGAATTAATTGATGCCACCAGAAAAGGTAGCATTGCTCGATTCATTAACCATTCTTGTGAACCAAATTGTGAAACTCGAAAGTGGACAGTCCTTGGAGAAGGTCGCGTTGGAATTTTTGCAAAGCGGGACATCCCTTGTGGTACAGAGTTATCATATGATTATAAGTTTGAGTTGGTATGGTGGTGCCAAGGTTCGATGTCTATGTGGAGC

Fln Alignment:

Contig4591___ECTPEYCPCGDRCKNQRFQRCEYVKTKLFKTDGRGWGLLADQDIKTGQFVIEYCGEVISREEARRRSQAYRSCRVER
D5AA49_________________ECGPA-CRCGSSCRNRVSQRGLAVRVAVVRHPRKGWSLHSLEPITRGAFVCEYAGELLTTVEARERQRHYDDAIVNK

SNPs (tot: 3)

Position	A %	T %	Probability
226	20	20	0.99255
227	20	80	0.995493
230	80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain