SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4565

Length: 1336 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4565

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene101	20/20

Source	Descriptions	Term	Type	Identity
AutoFact	amyloid beta precursor protein binding protein 1 [Arabidopsis thaliana] sp\|P42744.1\|ULA1_ARATH RecName: Full=NEDD8-activating enzyme E1 regulatory subunit; AltName: Full=Auxin-resistance protein AXR1 gb\|AAB59348.1\| ubiquitin-activating enzyme E1 [Arabidop	-	-	65%
FL-Next	sp=NEDD8-activating enzyme E1 regulatory subunit; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	nedd8-activating enzyme e1 regulatory subunit	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	82%
Blast2go	response to water deprivation	GO:0009414	Biological Process	82%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	82%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	82%
Blast2go	post-embryonic development	GO:0009791	Biological Process	82%
Blast2go	auxin homeostasis	GO:0010252	Biological Process	82%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	82%
Blast2go	small protein activating enzyme activity	GO:0008641	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	peroxisome	GO:0005777	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	UBA/THIF-type NAD/FAD binding fold	IPR000594	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P42744

Fln msg: your sequence is shorter than subject: 267 - 540

Fln protein: LSASAKLLDPPGISSDLRNIIDDSSADVNSNSSDFWVLVAALKEFIANEGEGEAPLEGSIPDMTSLTEYYVILQKIYQEKAEADFLSFERRVRSILKNIGRDPDSIPRASIKSFCRNARKLRVLRYRSLEDEFRSPVTAELQRYLGDEDKSTAVSFYVLLRAVDHFATSYNRYPGVFDEELDEDVSRLKTIGVGLLNDMGCVGANLSEDLISEMCRFGASELHCVAAFVGGITSQEVIKLITKQFVPISGTFIFNGIDHKSQLLAL*

Protein Length: 268

Fln nts: TTTGTCTGCTTCAGCCAAACTCTTGGACCCTCCAGGAATAAGTTCAGATCTCCGTAATATTATAGATGACAGCTCAGCTGATGTGAATTCCAATTCATCTGACTTTTGGGTATTGGTAGCTGCTCTAAAGGAATTTATTGCAAATGAAGGTGAAGGGGAGGCACCTCTTGAGGGATCAATTCCAGATATGACATCTTTAACTGAGTATTACGTAATCTTACAAAAGATCTACCAAGAGAAGGCCGAGGCAGATTTCTTATCTTTTGAGCGTAGAGTAAGAAGTATCCTAAAGAATATTGGAAGGGATCCGGATTCCATTCCAAGGGCAAGCATTAAAAGCTTCTGCAGAAATGCCAGAAAATTAAGAGTTCTTCGTTACCGCAGTTTGGAAGATGAATTCAGATCTCCTGTTACTGCTGAGTTACAAAGATATCTAGGTGATGAAGATAAAAGTACTGCTGTTAGTTTTTACGTTCTTCTCCGCGCTGTGGATCATTTTGCAACATCATACAATAGATACCCTGGAGTCTTTGATGAGGAGCTGGATGAGGATGTTTCACGATTAAAAACTATTGGTGTTGGACTCTTAAATGACATGGGTTGTGTTGGGGCTAACTTATCGGAGGACCTTATTAGTGAAATGTGCCGTTTTGGAGCTTCAGAGTTGCATTGTGTTGCAGCTTTTGTTGGTGGTATCACATCACAGGAAGTTATCAAGCTTATTACAAAGCAGTTTGTTCCTATTTCCGGGACATTCATATTTAATGGGATTGATCACAAGTCACAGCTGCTTGCACTATAA___ACAAACTCATCAAATCCTTTTACATACACTATTTCATAAAGATGACTTTGGAATTGCAGAGTACAAAGTTTTTCAGTAATACTTTGTACACCGGAGGCATTCTGCAGTACCTTGCTATCCTTTATGCCACATGTAAAATGTATTGAAGATACCGTGAGTTGTAGAGGTTGTGCCCAAAGCTCGTAAGCTTTAAAATTCTTATGGTAGAGATTAAAGCTGGTTGTGAGTTGTAAGGTTGTATGCCTCTATCAGTTTGTGTCATCTCTCTAAATGATAACTTTCTGCTGCAATTGTGGTAGATGCTACATAAGCAAGATGATGCATCTGCTTCATGTTATGTTCTTCAGCCTCCAGGCTTTCTCTGTCCTCTTGCAATGTTGTAAATCGTACCAGACTTAGCTAATTATATATTCTGAGGCTACCCAAATTATAATTTTGTGGCATGTTATTTTCCTAAGAATATTAAAGCCATCAAAACTTTACCATGACATCAGCGGTTTGGTTAAGAAGCACTTATTGCTAGACTGAGACTGC

Fln Alignment:

Contig4565___LSASAKLLDPPGISSDLRNIIXXXXXXXXXXXXXFWVLVAALKEFIANEGEGEAPLEGSIPDMTSLTEYYVILQKIYQEKAEADFLSFERRVRSILKNIGRDPDSIPRASIKSFCRNARKLRVLRYRSLEDEFRSPVTAELQRYLGDEDKSTAVSFYVLLRAVDHFATSYNRYPGVFDEELDEDVSRLKTIGVGLLNDMGCVGANLSEDLISEMCRFGASELHCVAAFVGGITSQEVIKLITKQFVPISGTFIFNGIDHKSQLLAL
P42744_________________IEAAFKVFAPRGISSEVQKLINDSCAEVNSNSSAFWVMVAALKEFVLNEGGGEAPLEGSIPDMTSSTEHYINLQKIYLAKAEADFLVIEERVKNILKKIGRDPSSIPKPTIKSFCKNARKLKLCRYRMVEDEFRNPSVTEIQKYLADEDYSGAMGFYILLRAADRFAANYNKFPGQFDGGMDEDISRLKTTALSLLTDLGCNGSVLPDDLIHEMCRFGASEIHVVSAFVGGIASQEVIKLVTKQFVPMLGTYIFNGIDHKSQLLKL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
245	14		85		0.993533
247			85	14	0.993533
249		85		14	0.993533
268	12		87		0.992554
269		87		12	0.992554
501	33		66		0.997452
504	66			33	0.997452
505		66		33	0.997452
638	20		80		0.995493
1048	16			83	0.994512
1081	16			83	0.994512
1082		16	83		0.994512
1085	83			16	0.994512
1105	20		80		0.995493
1106		20		80	0.995493
1108			80	20	0.995493
1109	80			20	0.995493
1237	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain