SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4545

Length: 463 nt

UniGene Fasta

>biog3_v1.0_unigene4545
AATGTGGTGGTTGTCACCCCAAATGTGCCAGACATAGAGGTCATCCCTCCGGAAGATGAGCATTTGCGTCATGTGATTGATACGATGGCTATGTATGTGCTTGATGATGGGTGTCCCTTTGAACAAGCTATAATGGAAAGAGGACGGGGCAATCCATTGTTTGGTTTTTATTTGATCTTGGATCTAAGGAGCATACTTACTATGTTTGGCGGCTCTATTCATTTGCTCAGGGAGATACTCTTCAAAGGTGGCGAACAGAACCTTTCATCATGATTACAGGGAGTGGGCGGTGGATACCACCACGTTTACCACAACAAAGTACAAAGAGTCCAGAGCATGAGAAAGCCTCGACTGCAACTTACGCTGCTAGAAGGACCAGGAGAGTGGATCAGGAGCGTGCCTTAACAGAGGGCCAAAGAGATGAATTTGAGGACATGCTTCGTGCTTTAACCTTAGAGACATT

Ace file of the UniGene biog3_v1.0_unigene4545

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13076	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNU3_RICCO	-	-	74%
FL-Next	tr=RNA binding protein, putative; Ricinus communis (Castor bean).	-	-	79%
Blast2go	protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	RNA processing	GO:0006396	Biological Process	83%
Blast2go	RNA binding	GO:0003723	Molecular Function	83%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	83%
Blast2go	protein binding	GO:0005515	Molecular Function	83%

Source	InterPros	Term	Type	Identity
Sma3	SWAP/Surp	IPR000061	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	RNA polymerase II, large subunit, CTD	IPR006569	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	mRNA splicing factor, Cwf21	IPR013170	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RNU3

Fln msg: Overlapping hits, possible frame ERROR between 168 and 147, Distance to subject end: 517 aas, your sequence is shorter than subject: 154 - 979

Fln protein: NVVVVTPNVPDIEVIPPEDEHLRHVIDTMAMYVLDDGCPFEQAIMERGxxxxxxxxxFDLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPRLPQQSTKSPEHEKASTATYAARRTRRVDQERALTEGQRDEFEDMLRALTLET

Protein Length: 155

Fln nts: AATGTGGTGGTTGTCACCCCAAATGTGCCAGACATAGAGGTCATCCCTCCGGAAGATGAGCATTTGCGTCATGTGATTGATACGATGGCTATGTATGTGCTTGATGATGGGTGTCCCTTTGAACAAGCTATAATGGAAAGAGGAxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTGATCTTGGATCTAAGGAGCATACTTACTATGTTTGGCGGCTCTATTCATTTGCTCAGGGAGATACTCTTCAAAGGTGGCGAACAGAACCTTTCATCATGATTACAGGGAGTGGGCGGTGGATACCACCACGTTTACCACAACAAAGTACAAAGAGTCCAGAGCATGAGAAAGCCTCGACTGCAACTTACGCTGCTAGAAGGACCAGGAGAGTGGATCAGGAGCGTGCCTTAACAGAGGGCCAAAGAGATGAATTTGAGGACATGCTTCGTGCTTTAACCTTAGAGACATT

Fln Alignment:

Contig4545___VVVTPNVPDIEVIPPEDEHLRHVIDTMAMYVLDDGCPFEQAIMERGRxxxxxxxLFDLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPRLPQQSTKSPEHEKXXXXXXXXXXXXXVDQERALTEGQRDEFEDMLRALTLE
B9RNU3_________________LVLTPNVPDIMVVPPDDDHLRHVIDTMALYVLDGGCAFEQAIMERGRxxxxxxxLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLP--TAKSPEHEKESGNTYAAGKSRRVDPERTLTDPQRDEFEDMLRALTLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain