SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4482

Length: 524 nt

UniGene Fasta

>biog3_v1.0_unigene4482
GGTTTATTGGAGATAGCAGAGGGAGTTACTTTTGAAATTCCGCCAGTTTATGACAAATTAGCACCACTTCTTAACTTGCCAAACTTTACAGATGTTCGAATAGAAGAGAGCTTTTGAAGGGTAGGCTAGATTTGAGATCTTTGTCTGCCATGATGGCTGCTGATAAAAGGATTAGACGTCAGAACTGTGCTGGAATGGGAGAACCTTCCACAAAGTATGAGACTCTTCAGGGCAGGTTGAAAGCACTATCATCATCATGTGACTCAAGCCAAAAGTTCTGTCTGCAAGTATTTGATTCTGATTTGGAAGCATTGCCAACACAGCAGGAATCATTAGGCATTCAAAGGCTGATTATGTCTGAAACAGGCAAATTGCAAATTTGTTATGTGAAGGTCTTGGAGAAAGGGGATAGCTATGAGATTATTGAACGCAAGCTACCCAAGAAGCATCCCATACAAAAAGATCCATCTGTGGTTGAAAGGGAGGATGCTGAGAAAATTGCAAAGAACTGGGCCAACATTGTC

Ace file of the UniGene biog3_v1.0_unigene4482

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20032	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] sp\|Q8RXS6.2\|INO80_ARATH RecName: Full=DNA helicase INO80; Short=AtINO80; AltName: Full=Putative DNA helicase INO80 complex homolog 1 gb\|AEE79637.1\| DNA helicase INO80 complex-like 1 [Arabidopsis tha	-	-	48%
FL-Next	sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress).	-	-	52%
Blast2go	chromatin remodeling complex subunit	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of DNA repair	GO:0045739	Biological Process	71%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	71%
Blast2go	somatic cell DNA recombination	GO:0016444	Biological Process	71%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8RXS6

Fln msg: Overlapping hits, possible frame ERROR between 114 and 114, Distance to subject end: 1152 aas, your sequence is shorter than subject: 175 - 1507

Fln protein: GLLEIAEGVTFEIPPVYDKLAPLLNLPNFTDVRIEESxxKGRLDLRSLSAMMAADKRIRRQNCAGMGEPSTKYETLQGRLKALSSSCDSSQKFCLQVFDSDLEALPTQQESLGIQRLIMSETGKLQICYVKVLEKGDSYEIIERKLPKKHPIQKDPSVVEREDAEKIAKNWANIV

Protein Length: 176

Fln nts: GGTTTATTGGAGATAGCAGAGGGAGTTACTTTTGAAATTCCGCCAGTTTATGACAAATTAGCACCACTTCTTAACTTGCCAAACTTTACAGATGTTCGAATAGAAGAGAGCxxxxxxAAGGGTAGGCTAGATTTGAGATCTTTGTCTGCCATGATGGCTGCTGATAAAAGGATTAGACGTCAGAACTGTGCTGGAATGGGAGAACCTTCCACAAAGTATGAGACTCTTCAGGGCAGGTTGAAAGCACTATCATCATCATGTGACTCAAGCCAAAAGTTCTGTCTGCAAGTATTTGATTCTGATTTGGAAGCATTGCCAACACAGCAGGAATCATTAGGCATTCAAAGGCTGATTATGTCTGAAACAGGCAAATTGCAAATTTGTTATGTGAAGGTCTTGGAGAAAGGGGATAGCTATGAGATTATTGAACGCAAGCTACCCAAGAAGCATCCCATACAAAAAGATCCATCTGTGGTTGAAAGGGAGGATGCTGAGAAAATTGCAAAGAACTGGGCCAACATTGTC

Fln Alignment:

Contig4482___LEIAEGVTFEIPPVYDKLAPLLNLPNFTDVRIEESFLKGRLDLRSLSAMMAADKRIRRQNCAGMGEPSTKYETLQGRLKALSSSCDSSQKFCLQVFDSDLEALPTQQESLGIQRLIMSETGKLQICYVKVLEKGDSYEIIERKLPKKHPIQKDPSVVEREDAEKIAKNWANIV
Q8RXS6_________________LDIGDGVIYKIPPSYDKLVASLNLPSFSDIHVEEFYLKGTLDLRSLAELMASDKRSGVRSRNGMGEPRPQYESLQARMKALSPS-NSTPNFSLKVSEAAMNSAIPEGSAGSTARTILSEGGVLQVHYVKILEKGDTYEIVKRSLPKKLKAKNDPAVIEKTERDKIRKAWINIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain