SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4477

Length: 469 nt

UniGene Fasta

>biog3_v1.0_unigene4477
AATGTATTACACCGGCTGCGGGTATCTACTCGGTGCCGTCTCCGGTGCCAGCGTTGGCCTGGTCGAGGGCTTGAAGGCCCGGGAGCCGGGAGATTCCATGAAGCTCAGGGTTAACAGGGTCTTGAACGCCTCTGGCCACACGGGAATGAAGTTTGGCAACAGACTGGGCGTCATAGGGCTCCTCTACGCCGGATTGGAGAGCGGGATCGTGGCTGCGAGGGGTACCGACGATATCTTCAACAGCGTTTGCGCTGGGCTTGGCACCGGTGCGCTTTACAAGGCCGCCGCTGGTCCTAGGTCGGCTGCCGTCGCCGGAGCAATCGGGGGACTTGCTGTTGGAGCTCTTGTCGCTGGGAAGCAGGCTCTTAAGAGATACGTGCCCATTTGACCGTGCTCTCCTGTATGGACTTAACTGCCATCTCTTTTTAGAAGACCTTTTAATTTATTAGTATCAGGGTTTGCATTTATA

Ace file of the UniGene biog3_v1.0_unigene4477

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4325	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	translocase inner membrane subunit 23-2 [Arabidopsis thaliana] gb\|AAG51855.1\|AC010926_18 inner mitochondrial membrane protein; 26940-26374 [Arabidopsis thaliana] gb\|AAA57314.1\| inner mitochondrial membrane protein [Arabidopsis thaliana] gb\|AAK68832.1\| inn	-	-	8.00141e-43	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	mitochondrial import inner membrane translocase subunit tim23-like	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	78%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	78%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	IPR003397	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRH4

Fln msg: your sequence is shorter than subject: 129 - 189

Fln protein: MYYTGCGYLLGAVSGASVGLVEGLKAREPGDSMKLRVNRVLNASGHTGMKFGNRLGVIGLLYAGLESGIVAARGTDDIFNSVCAGLGTGALYKAAAGPRSAAVAGAIGGLAVGALVAGKQALKRYVPI*

Protein Length: 130

Fln nts: AATGTATTACACCGGCTGCGGGTATCTACTCGGTGCCGTCTCCGGTGCCAGCGTTGGCCTGGTCGAGGGCTTGAAGGCCCGGGAGCCGGGAGATTCCATGAAGCTCAGGGTTAACAGGGTCTTGAACGCCTCTGGCCACACGGGAATGAAGTTTGGCAACAGACTGGGCGTCATAGGGCTCCTCTACGCCGGATTGGAGAGCGGGATCGTGGCTGCGAGGGGTACCGACGATATCTTCAACAGCGTTTGCGCTGGGCTTGGCACCGGTGCGCTTTACAAGGCCGCCGCTGGTCCTAGGTCGGCTGCCGTCGCCGGAGCAATCGGGGGACTTGCTGTTGGAGCTCTTGTCGCTGGGAAGCAGGCTCTTAAGAGATACGTGCCCATTTGA___CCGTGCTCTCCTGTATGGACTTAACTGCCATCTCTTTTTAGAAGACCTTTTAATTTATTAGTATCAGGGTTTGCATTTATA

Fln Alignment:

Contig4477___YYTGCGYLLGAVSGASVGLVEGLKAREPGDSMKLRVNRVLNASGHTGMKFGNRLGVIGLLYAGLESGIVAARGTDDIFNSVCAGLGTGALYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRYVPI
A9NRH4_________________YYTGCGYLLGAVSGASVGLVEGLKAREPGDSMKLRVNRVLNASGHTGRKFGNRLGVIGLLYAGLESGIVAGRGTDDILNSVCAGLGTGALYKAAAGPRSAAVAGAIGGLAVGALVAGKQALKRYVPI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
383	25	75			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain