SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4416

Length: 531 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene4416
AAGGCCAAGTCATCCTGACGGGGATTCACGATAACGTAATACTTACGCCTGGCTCAGGAACTGGCCTCGTCGAAGGTGCATTCATTGGTGCCAATGCCTCGGAAAGCAAAAGCCACCACGTTTTTCCGATTGGGGTGCTCGAAGGTCTCCGTTTCATGTGTTGCTTCCGCTTCAAGCTGTGGTGGATGACCCAGCGGATGGGAACGTGCGGAAGAGATGTTCCGTTGGAGACGCAATTCATGCTCTTGGAGAGCAAGTACGGGTCTTCTCTCAGCGAAGACATGGATCGTGGGGAAGACGAGCAGAACATTTACATCGTTTTCCTTCCTCTTTTAGAAGGGCAATTCAGAGCCGTTCTTCAAGGCAATGAACGAAATGAATTAGAAGTTTGCATTGAAAGTGGAGATTCTGCGGTGACTACCACCCAAGGGCTGCATTCAGTTTACATGCATGCAGGACCGGATCCGTTTGAAGTTATCACGGACGCTGTCAAGGCTGTGGAAAGACAGTTGCAGACGTTTCACCACCGTG

Ace file of the UniGene biog3_v1.0_unigene4416 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6301	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	pfam05691, Raffinose_syn, Raffinose synthase or seed inhibition protein Sip1	-	-	54%
FL-Next	Isoform 3 of Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2	-	-	70%
Blast2go	alkaline alpha galactosidase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		82%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130		82%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		82%
Blast2go	Glycosaminoglycan degradation	00531		82%
Blast2go	Metabolic pathways	01100		82%
Blast2go	Galactinol--sucrose galactosyltransferase.	EC:2.4.1.82	-	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Galactose metabolism	00052		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	82%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	82%
Blast2go	raffinose catabolic process	GO:0034484	Biological Process	82%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	82%
Blast2go	galactinol-sucrose galactosyltransferase activity	GO:0047274	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	82%
Blast2go	response to karrikin	GO:0080167	Biological Process	82%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Raffinose synthase	IPR008811	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94A08-3

Fln msg: Distance to subject end: 376 aas, your sequence is shorter than subject: 176 - 564

Fln protein: GQVILTGIHDNVILTPGSGTGLVEGAFIGANASESKSHHVFPIGVLEGLRFMCCFRFKLWWMTQRMGTCGRDVPLETQFMLLESKYGSSLSEDMDRGEDEQNIYIVFLPLLEGQFRAVLQGNERNELEVCIESGDSAVTTTQGLHSVYMHAGPDPFEVITDAVKAVERQLQTFHHR

Protein Length: 177

Fln nts: AAGGCCAAGTCATCCTGACGGGGATTCACGATAACGTAATACTTACGCCTGGCTCAGGAACTGGCCTCGTCGAAGGTGCATTCATTGGTGCCAATGCCTCGGAAAGCAAAAGCCACCACGTTTTTCCGATTGGGGTGCTCGAAGGTCTCCGTTTCATGTGTTGCTTCCGCTTCAAGCTGTGGTGGATGACCCAGCGGATGGGAACGTGCGGAAGAGATGTTCCGTTGGAGACGCAATTCATGCTCTTGGAGAGCAAGTACGGGTCTTCTCTCAGCGAAGACATGGATCGTGGGGAAGACGAGCAGAACATTTACATCGTTTTCCTTCCTCTTTTAGAAGGGCAATTCAGAGCCGTTCTTCAAGGCAATGAACGAAATGAATTAGAAGTTTGCATTGAAAGTGGAGATTCTGCGGTGACTACCACCCAAGGGCTGCATTCAGTTTACATGCATGCAGGACCGGATCCGTTTGAAGTTATCACGGACGCTGTCAAGGCTGTGGAAAGACAGTTGCAGACGTTTCACCACCGTG

Fln Alignment:

Contig4416___GQVILTGIHDNVILTPGSGTGLVEGAFIGANASESKSHHVFPIGVLEGLRFMCCFRFKLWWMTQRMGTCGRDVPLETQFMLLESKYGSSLSEDMDRGEDEQNIYIVFLPLLEGQFRAVLQGNERNELEVCIESGDSAVTTTQGLHSVYMHAGPDPFEVITDAVKAVERQLQTFHHR
Q94A08-3_______________GKTILTKIPDNIILTPVTGNGFVSGSFIGATFEQSKSLHVFPIGVLEGLRFMCCFRFKLWWMTQRMGSCGKDIPLETQFMLLESK-----DEVEGNGDDAPTVYTVFLPLLEGQFRAVLQGNEKNEIEICFESGDKAVETSQGTHLVYVHAGTNPFEVIRQSVKAVERHMQTFHHR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
244	20		80		0.995493
248		80		20	0.995493
336	25	75			0.996473
338	25		75		0.996473
339		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain