SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4382

Length: 442 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene4382
ATTAATTCAAGGCGTGGTCAGATCAACACTTTTGCTGACAAGCCAGGAGGACTGAAGGTGATTGATGCTTTGGTGCCACTGGCAGAGATGTTTCAGTACGTGAGTACACTCCGTAGTATGACCAAAGGCCGTGCATCTTATACTATGCAACTTGCTAAGTTTGATGTTGTACCTCAGCATATACAAAACCAACTTTCTTCAAAGGTTCAAGAGGTGGCTGCTTGAAAATTTTGTAAAATTTCTACGAATTAGTATTAATTGGCTATCCATGCCAAACCTGTACTTTGGTTTCTTCTTCACATACACATCACAAAGTATTGTACTCTTACCTATTTGGATTGATTCATTGGTAAATTGAACCAAAAGGCAAGCTCAATCTTATCTTTGCATCAGTGTTTGTGATGTAAATGAAAACCAATGTTTCAGAATTTGCTCAGCAAAA

Ace file of the UniGene biog3_v1.0_unigene4382 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene41	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Translation elongation factor G, putative n=1 Tax=Ricinus communis RepID=B9RBP7_RICCO	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	elongation factor chloroplastic-like	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	seed germination	GO:0009845	Biological Process	91%
Blast2go	translational elongation	GO:0006414	Biological Process	91%
Blast2go	chloroplast organization	GO:0009658	Biological Process	91%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	91%
Blast2go	translation elongation factor activity	GO:0003746	Molecular Function	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	GTPase activity	GO:0003924	Molecular Function	91%
Blast2go	GTP binding	GO:0005525	Molecular Function	91%
Blast2go	mitochondrion	GO:0005739	Cellular Component	91%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	91%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	91%
Blast2go	apoplast	GO:0048046	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Translation elongation factor EFG/EF2	IPR004540	-	-
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKZ4

Fln msg: your sequence is shorter than subject: 75 - 785

Fln protein: INSRRGQINTFADKPGGLKVIDALVPLAEMFQYVSTLRSMTKGRASYTMQLAKFDVVPQHIQNQLSSKVQEVAA*

Protein Length: 76

Fln nts: ATTAATTCAAGGCGTGGTCAGATCAACACTTTTGCTGACAAGCCAGGAGGACTGAAGGTGATTGATGCTTTGGTGCCACTGGCAGAGATGTTTCAGTACGTGAGTACACTCCGTAGTATGACCAAAGGCCGTGCATCTTATACTATGCAACTTGCTAAGTTTGATGTTGTACCTCAGCATATACAAAACCAACTTTCTTCAAAGGTTCAAGAGGTGGCTGCTTGA___AAATTTTGTAAAATTTCTACGAATTAGTATTAATTGGCTATCCATGCCAAACCTGTACTTTGGTTTCTTCTTCACATACACATCACAAAGTATTGTACTCTTACCTATTTGGATTGATTCATTGGTAAATTGAACCAAAAGGCAAGCTCAATCTTATCTTTGCATCAGTGTTTGTGATGTAAATGAAAACCAATGTTTCAGAATTTGCTCAGCAAAA

Fln Alignment:

Contig4382___INSRRGQINTFADKPGGLKVIDALVPLAEMFQYVSTLRSMTKGRASYTMQLAKFDVVPQHIQNQLSSKVQEVAA
B8LKZ4_________________INSRRGQINTFDDKPGGLKVIDALVPLAEMFQYVSTLRSMTKGRASYTMQVAMFDVVPQHIQNQLSSKVQEVAA

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
111	66		33		0.997452
136	20		80		0.995493
200	37		62		1.0
214	57		42		1.0
238	57	42			1.0
250	66	33			1.0
265	50		50		1.0
349		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain