SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4330

Length: 285 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene4330
AATGTCATCGAGTATGGCCAAAAATGGATATGCCAGCAGCAATAACTGATGAAGAAAAAAGTTCTCAAAAATCATCCAAAGAAACTCATAGCCGGCCTCAAACTAACTCGACAAGGAGTTGCACAAAGGTCCACAAACAGGGTAGTGCTCTTGGTAGGGCTGTGGATCTTACTAAATTTGAAGGGTATACGGAACTCATTCGTGAACTAGAACAGATGTTTAAACATTGAAGGAGAACTTGAGGATCCAAGCAAAGGTTGGCAGGTTGTATACACTGACAATGAA

Ace file of the UniGene biog3_v1.0_unigene4330 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1913	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	auxin response factor 2 [Solanum lycopersicum]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	auxin response factor-like protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	response to hormone stimulus	GO:0009725	Biological Process	75%
Blast2go	fruit dehiscence	GO:0010047	Biological Process	75%
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	75%
Blast2go	negative regulation of cell proliferation	GO:0008285	Biological Process	75%
Blast2go	ovule development	GO:0048481	Biological Process	75%
Blast2go	floral organ abscission	GO:0010227	Biological Process	75%
Blast2go	leaf senescence	GO:0010150	Biological Process	75%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	75%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Protein of unknown function DUF482	IPR007434	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTP3

Fln msg: Separated hits, possible frame ERROR between 221 and 223, Distance to subject end: 75 aas, your sequence is shorter than subject: 95 - 450

Fln protein: CHRVWPKMDMPAAITDEEKSSQKSSKETHSRPQTNSTRSCTKVHKQGSALGRAVDLTKFEGYTELIRELEQMxxNIEGELEDPSKGWQVVYTDNE

Protein Length: 96

Fln nts: AATGTCATCGAGTATGGCCAAAAATGGATATGCCAGCAGCAATAACTGATGAAGAAAAAAGTTCTCAAAAATCATCCAAAGAAACTCATAGCCGGCCTCAAACTAACTCGACAAGGAGTTGCACAAAGGTCCACAAACAGGGTAGTGCTCTTGGTAGGGCTGTGGATCTTACTAAATTTGAAGGGTATACGGAACTCATTCGTGAACTAGAACAGATGTTxxxAAACATTGAAGGAGAACTTGAGGATCCAAGCAAAGGTTGGCAGGTTGTATACACTGACAATGAA

Fln Alignment:

Contig4330___KMDMPAAITDXXXXXXXXXXETHSRPQTNSTRSCTKVHKQGSALGRAVDLTKFEGYTELIRELEQMFxNIEGELEDPSKGWQVVYTDNE
C0PTP3_________________KMDMPAAIIDEEKSSQKSSKETHNRPQSNSTRSCTKVHKQGSALGRAVDLTKFEGYTELIRELEQMFxNIEGELEDPNKGWQVVYTDNE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
203			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain