SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4310

Length: 987 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4310

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4026	14/23
SustainPine v2.0	sp_v2.0_unigene21749	3/23
SustainPine v2.0	sp_v2.0_unigene25478	1/23
SustainPine v2.0	sp_v2.0_unigene28858	4/23

Source	Descriptions	Term	Type	Identity
AutoFact	U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	u1 small nuclear ribonucleoprotein-70k	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	85%
Blast2go	RNA binding	GO:0003723	Molecular Function	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	85%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
444		33		66	0.997452
456	66		33		0.997452
507	75		25		0.996473
528	25		75		0.996473
534	75		25		0.996473
546	25		75		0.996473
547	25			75	0.996473
553		75		25	0.996473
570	25		75		0.996473
573	75		25		0.996473
609	80		20		0.995493
611	80		20		0.995493
658	33	66			0.997452
670	40		60		1.0
695	27	63		9	1.0
697			72	27	1.0
767	20	80			0.999996
787		22		77	0.999999
797	88			11	0.923564
798		88		11	0.923564
808	14		85		0.993533
812	85		14		0.993533
815	85	14			0.993533
835	14		85		0.993533
853		16		66	0.988813
854		16		83	0.994512
871		20		80	0.995493
874	75		25		0.996473
901			75	25	0.996473
922		33		66	0.997452
925			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain