SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4216

Length: 372 nt

UniGene Fasta

>biog3_v1.0_unigene4216
AGGTTTCTTGTAAGTTACCAGCATTGGACATTTTATCCTACCATGGCCTTTGCCAGGGTACTTCTGTTTATGCAGTCCATTGTATTACATTTGTCCAAAAATAGGGTACCCAACAAGGGTTTAGATATTGCAGGGCTTTTGTTCTTCTGGACTTGGTTTTCGTTGCTCGTGTCCTGCCTGCCTTCCTGGCCGGAAAGAATTGCCTTCGTGCTCTCCAGCTTCGCGGTGACCGGAATCCAGCATGTCCAGTTCTGTTTGAATCATTTTTCGGCGGAGAGCTATGTCGGAAGGCCGTGCAGCACATCGTGGATTGGAGATCAGGCGAGGGGAACGATCGATATACAGTGTGGCCCGTGGATGGATTGGTTTCAC

Ace file of the UniGene biog3_v1.0_unigene4216

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6337	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	D8-sphingolipid desaturase n=1 Tax=Jatropha curcas RepID=A4UIY7_9ROSI	-	-	58%
FL-Next	tr=D8-sphingolipid desaturase; Jatropha curcas.	-	-	66%
Blast2go	delta-8 sphingolipid desaturase	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	73%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	73%
Blast2go	iron ion binding	GO:0005506	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b5	IPR001199	-	-
Sma3	Fatty acid desaturase, type 1	IPR005804	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Fatty acid/sphingolipid desaturase	IPR012171	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A4UIY7

Fln msg: Distance to subject end: 81 aas, your sequence is shorter than subject: 124 - 447

Fln protein: RFLVSYQHWTFYPTMAFARVLLFMQSIVLHLSKNRVPNKGLDIAGLLFFWTWFSLLVSCLPSWPERIAFVLSSFAVTGIQHVQFCLNHFSAESYVGRPCSTSWIGDQARGTIDIQCGPWMDWFH

Protein Length: 125

Fln nts: AGGTTTCTTGTAAGTTACCAGCATTGGACATTTTATCCTACCATGGCCTTTGCCAGGGTACTTCTGTTTATGCAGTCCATTGTATTACATTTGTCCAAAAATAGGGTACCCAACAAGGGTTTAGATATTGCAGGGCTTTTGTTCTTCTGGACTTGGTTTTCGTTGCTCGTGTCCTGCCTGCCTTCCTGGCCGGAAAGAATTGCCTTCGTGCTCTCCAGCTTCGCGGTGACCGGAATCCAGCATGTCCAGTTCTGTTTGAATCATTTTTCGGCGGAGAGCTATGTCGGAAGGCCGTGCAGCACATCGTGGATTGGAGATCAGGCGAGGGGAACGATCGATATACAGTGTGGCCCGTGGATGGATTGGTTTCAC

Fln Alignment:

Contig4216___RFLVSYQHWTFYPTMAFARVLLFMQSIVLHLSKNRVPNKGLDIAGLLFFWTWFSLLVSCLPSWPERIAFVLSSFAVTGIQHVQFCLNHFSAESYVGRPCSTSWIGDQARGTIDIQCGPWMDWFH
A4UIY7_________________RFLVSYQHWTFYPVMCFARLNLFAQSFLLLLSKRRVPNRGQEILGVLVFWIWYPLLVSCLPNWGERVMFVLASFAVTGIQHVQFCLNHFSSNVYVGLPSGNDWFEKQTKGTLNINCSSWMDWFH

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
88	33	66			0.997452
91			33	66	0.997452
308	20		80		0.995493
310			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain