SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4202

Length: 927 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4202 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2796	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphorylase n=1 Tax=Ricinus communis RepID=B9S366_RICCO	-	-	78%
FL-Next	sp=Phosphorylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	alpha-glucan h isozyme-like	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphorylase.	EC:2.4.1.1	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	88%
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	88%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	88%
Blast2go	phosphorylase activity	GO:0004645	Molecular Function	88%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%
Blast2go	cytosol	GO:0005829	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycogen/starch/alpha-glucan phosphorylase	IPR011833	-	0.0	-
Sma3	Glycosyl transferase, family 35	IPR000811	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUV6

Fln msg: your sequence is shorter than subject: 241 - 399

Fln protein: RKNVVPRTVMLGGKAFATYTQAKRIVKLVNDVGAVVNNDPDIGDLLKVVFIPNYNVSVAEILIPGSELSQHISTAGMEASGTSNMKFALNGCLIIGTLDGANVEIREEIGEDNFFLFGAQAHDVPKLRREREQGLFVPDPRFEEAKQFVKSRAFGDYDYTPLLDSLEGNTGYGRGDYFLVGYDFPSYMEAQSRVDDAYKDAKKWIKMSILSTAGSGKFSSDRTISQYANDIWNIKECRVP*

Protein Length: 242

Fln nts: AACGCAAGAATGTGGTGCCACGAACTGTCATGCTTGGTGGAAAAGCATTTGCAACATATACCCAAGCTAAGAGGATTGTGAAACTTGTGAATGATGTAGGGGCTGTCGTGAATAATGACCCAGATATTGGTGATCTTTTGAAGGTAGTCTTCATTCCAAACTACAATGTGTCAGTTGCAGAGATTCTTATTCCAGGAAGTGAGCTATCTCAGCATATTAGCACAGCTGGAATGGAGGCAAGTGGAACTAGCAATATGAAGTTTGCATTAAATGGGTGTCTCATTATTGGTACACTAGATGGTGCCAATGTAGAAATCAGAGAAGAGATAGGGGAAGATAACTTTTTCTTGTTTGGTGCCCAAGCACATGATGTACCAAAACTACGGAGAGAGAGAGAGCAGGGACTGTTTGTCCCAGACCCTCGTTTTGAAGAAGCAAAGCAGTTTGTGAAAAGCCGTGCATTTGGTGATTATGATTACACTCCACTACTTGACTCCCTTGAAGGCAATACTGGTTATGGTCGTGGTGATTATTTCCTTGTGGGATATGACTTCCCAAGCTACATGGAAGCACAATCTAGAGTTGATGATGCATACAAGGATGCCAAAAAGTGGATAAAAATGTCAATCCTAAGTACTGCTGGCAGTGGTAAATTTAGCAGTGATAGAACCATCTCTCAATATGCCAATGACATTTGGAATATAAAGGAATGCAGAGTTCCTTAG___TGAGTGCATGAAGAAATTCCACTTCGTCCAAAATGGCTCAACTGCTTCGGATACTACCAAAAATAATGAAACGAATTCTTCCATTAAAAGGGTGTTCAAGATGATTGTCATTTTATAAGGATAAGCTTATAAAATATGTATCTGGGAAGAGGATGCGGCATGTCCTTTTGAAGAATATGCTTATTTTAATCTTTTCAAGGAT

Fln Alignment:

Contig4202___RKNVVPRTVMLGGKAFATYTQAKRIVKLVNDVGAVVNNDPDIGDLLKVVFIPNYNVSVAEILIPGSELSQHISTAGMEASGTSNMKFALNGCLIIGTLDGANVEIREEIGEDNFFLFGAQAHDVPKLRREREQGLFVPDPRFEEAKQFVKSRAFGDYDYTPLLDSLEGNTGYGRGDYFLVGYDFPSYMEAQSRVDDAYKDAKKWIKMSILSTAGSGKFSSDRTISQYANDIWNIKECRVP
A9NUV6_________________RAKFVPRVCIFGGKAFATYVQAKRIVKLITDVGVTINHDTEIGDLLKIVFIPDYNVSVAETLIPASELSQHISTAGMEASGTSNMKFSMNGCVLIGTLDGANVEIREEVGEENFFLFGARAHEIAGLRKERAEGKFKPDPRFEEAKDYIKSGVFGKYDYRPLIDSLEGNEGYGRGDYFLVGKDFPAYVECQERVDAAYGDQEKWTRMSILNTAGSYKFSSDRTIHEYAKDIWGVKQVKLP

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
399	20			80	0.995493
402		80		20	0.995493
403		80		20	0.995493
444	25		75		0.996473
447			66	33	0.997452
723		20	80		0.995493
726	80			20	0.995493
727		25	75		0.996473
728	25	75			0.996473
730		75		25	0.996473
754	33	66			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
530	542	CT CT CT CT CT CT C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain