SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4199

Length: 396 nt

UniGene Fasta

>biog3_v1.0_unigene4199
AATGTGGACATATTTTCACTGCTTTTTGCGAAACCTGTATCATCACAATCAGGAGTGCCCACGGTCCTATGACAAACTTCGGTTTGATCCAAGCAAACCAGAATGCAGGTTGTTGGTAACCCACGATGACTACAGCATCTTGACAAAGCTGCCAAAAGTGAAAACATCTGTTGTAACAGTTTTGCGTGGTCCGGTGGATCGGGTGTTTAGCACTTACGAGTTTTCTGTGGAGGTTGCATCCAGGTTTTTGATTCATCCAAATTTATCATCTTCTATGCGCTTGAGACGAATGGACAGCAAATCATCTAACATAGTCAGCACCCTTGACATTTGGCCATGGAGGTATCTAGTGCCATGGATGCGTGAAGATCTTTTTGCCCGGCGCGATGCAAGGCA

Ace file of the UniGene biog3_v1.0_unigene4199

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10601	4/5
SustainPine v2.0	sp_v2.0_unigene35406	1/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein T6D22.10 (ISS) [Ostreococcus tauri] emb\|CAL55606.1\| protein T6D22.10 (ISS) [Ostreococcus tauri]	-	-	1.0e-17	38%
FL-Next	Isoform 2 of Protein-tyrosine sulfotransferase OS=Arabidopsis thaliana GN=TPST	-	-	0.0	66%
Blast2go	protein-tyrosine sulfotransferase	-	-	0.0	82%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.8.2.2-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	regulation of gene expression	GO:0010468	Biological Process	82%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	82%
Blast2go	stem cell maintenance	GO:0019827	Biological Process	82%
Blast2go	carbohydrate biosynthetic process	GO:0016051	Biological Process	82%
Blast2go	regulation of root meristem growth	GO:0010082	Biological Process	82%
Blast2go	protein-tyrosine sulfotransferase activity	GO:0008476	Molecular Function	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	82%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heparan sulphate 6-sulfotransferase	IPR010635	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q3EDG5-2

Fln msg: Distance to subject end: 127 aas, your sequence is shorter than subject: 131 - 327

Fln protein: MWTYFHCFLRNLYHHNQECPRSYDKLRFDPSKPECRLLVTHDDYSILTKLPKVKTSVVTVLRGPVDRVFSTYEFSVEVASRFLIHPNLSSSMRLRRMDSKSSNIVSTLDIWPWRYLVPWMREDLFARRDAR

Protein Length: 132

Fln nts: AATGTGGACATATTTTCACTGCTTTTTGCGAAACCTGTATCATCACAATCAGGAGTGCCCACGGTCCTATGACAAACTTCGGTTTGATCCAAGCAAACCAGAATGCAGGTTGTTGGTAACCCACGATGACTACAGCATCTTGACAAAGCTGCCAAAAGTGAAAACATCTGTTGTAACAGTTTTGCGTGGTCCGGTGGATCGGGTGTTTAGCACTTACGAGTTTTCTGTGGAGGTTGCATCCAGGTTTTTGATTCATCCAAATTTATCATCTTCTATGCGCTTGAGACGAATGGACAGCAAATCATCTAACATAGTCAGCACCCTTGACATTTGGCCATGGAGGTATCTAGTGCCATGGATGCGTGAAGATCTTTTTGCCCGGCGCGATGCAAGGCA

Fln Alignment:

Contig4199___TYFHCFLRNLYHHNQECPRSYDKLRFDPSKPECRLLVTHDDYSILTKLPKVKTSVVTVLRGPVDRVFSTYEFSVEVASRFLIHPNXXXXXXXXXXXXXXXNIVSTLDIWPWRYLVPWMREDLFARRDAR
Q3EDG5-2_______________TYFHCFLRKLYDSSEECPRSYDKLHFNPRKEKCKLLATHDDYSLMAKLPRERTSVMTIVRDPIARVLSTYEFSVEVAARFLVHPN-LTSASRMSSRIRKSNVISTLDIWPWKYLVPWMREDLFARRDAR

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
53	33		66		0.997452
254		80	20		0.995493
257		80		20	0.995493
262		20		80	0.995493
279		20	80		0.995493
285		20	80		0.995493
291		20		80	0.995493
292	20		80		0.995493
296	80		20		0.995493
303		80		20	0.995493
304	80		20		0.995493
311	80			20	0.995493
313	80			20	0.995493
323		80	20		0.995493
331	20			80	0.995493
340	25		75		0.996473
341		25	75		0.996473
344			75	25	0.996473
356	33	66			0.997452
360			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain