SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4186

Length: 530 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene4186
AATGTATCGATTCCGACGAGGAGTCGGAGCAGGATGAAGAACAGGACGATGTTCGCATGCACGACCGCGACGAAGAAGATGCAAATGAGGATGGAGACGCCGCATGGCTCGCTCGAACCCACGGCCCCCTCGACCACCACAATCAACAAGGCCCCGACGACGATGACGACGTCGACATGGAAGGCCAAGTGGTTCTTGCAGAGGACAAGAAATACTATCCGACTGCAGAGGAAGTCTATGGCGAGGGCGTCGAAACTCTGGTCATGGAGGAGGACGCCCAGCCTTTGGAGCAACCCATCGTCAAGCCCGTCAGAAACATTAAATTCGAAGTGGGTGTCAAGGACTCCACCACATATGTTTCCACTGATTTCTTGCTGGGCTTGATGTCAAACCCTACGCTAGTCAGAAATGTGGCACTTGTCGGGCACCTTCAGCACGGAAAAACTCTGTTTATGGACATGCTGATTGAGCAAACCCATCATAATCGCGACATTTGATGTTAACAGCGAGAAGCACATGCGGTATACCGA

Ace file of the UniGene biog3_v1.0_unigene4186 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4595	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] ref\|NP_849600.1\| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] gb\|AAF80219.1\|AC025290_8 Contains similarity to an U5 snRNP-specific protein 116 kD from Homo sapiens	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	88%
Blast2go	u5 small nuclear ribonucleoprotein component	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	regulation of embryo sac egg cell differentiation	GO:0045694	Biological Process	91%
Blast2go	translational elongation	GO:0006414	Biological Process	91%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	91%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	91%
Blast2go	translation elongation factor activity	GO:0003746	Molecular Function	91%
Blast2go	GTPase activity	GO:0003924	Molecular Function	91%
Blast2go	GTP binding	GO:0005525	Molecular Function	91%
Blast2go	cell wall	GO:0005618	Cellular Component	91%
Blast2go	nucleolus	GO:0005730	Cellular Component	91%
Blast2go	nuclear speck	GO:0016607	Cellular Component	91%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A5BRS2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 807 aas, atg_distance in limit (1-15): atg_distance = 6, your sequence is shorter than subject: 147 - 988

Fln protein: MHDRDEEDANEDGDAAWLARTHGPLDHHNQQGPDDDDDVDMEGQVVLAEDKKYYPTAEEVYGEGVETLVMEEDAQPLEQPIVKPVRNIKFEVGVKDSTTYVSTDFLLGLMSNPTLVRNVALVGHLQHGKTLFMDMLIEQTHHNRDI*

Protein Length: 148

Fln nts: AATGTATCGATTCCGACGAGGAGTCGGAGCAGGATGAAGAACAGGACGATGTTCGC_-_ATGCACGACCGCGACGAAGAAGATGCAAATGAGGATGGAGACGCCGCATGGCTCGCTCGAACCCACGGCCCCCTCGACCACCACAATCAACAAGGCCCCGACGACGATGACGACGTCGACATGGAAGGCCAAGTGGTTCTTGCAGAGGACAAGAAATACTATCCGACTGCAGAGGAAGTCTATGGCGAGGGCGTCGAAACTCTGGTCATGGAGGAGGACGCCCAGCCTTTGGAGCAACCCATCGTCAAGCCCGTCAGAAACATTAAATTCGAAGTGGGTGTCAAGGACTCCACCACATATGTTTCCACTGATTTCTTGCTGGGCTTGATGTCAAACCCTACGCTAGTCAGAAATGTGGCACTTGTCGGGCACCTTCAGCACGGAAAAACTCTGTTTATGGACATGCTGATTGAGCAAACCCATCATAATCGCGACATTTGATGTTAACAGCGAGAAGCACATGCGGTATACCGA

Fln Alignment:

Contig4186___MEGQVVLAEDKKYYPTAEEVYGEGVETLVMEEDAQPLEQPIVKPVRNIKFEVGVKDSTTYVSTDFLLGLMSNPTLVRNVALVGHLQHGKTLFMDMLIEQTHH
A5BRS2_________________MDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRNIKFELGVKDSSTYVSTQFLLGLMSNPALVRNVALVGHLQHGKTLFMDMLVEQTHH

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
296	25	75			0.996473
299	75		25		0.996473
300			75	25	0.996473
357	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain