SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4164

Length: 304 nt

UniGene Fasta

>biog3_v1.0_unigene4164
AATGTATGGTGACAGTTATGCTTTTCTGCTCAAGGGTCACGAAGATCTGCGACAAGATGAGCGTGTCATGCAGCTGTTTGGTCTAGTGAACACTTTGTTGGCAAATGCACCACAAACTGCAGAGAAAGATCTCTCTATTGAACGATATTCTGTGATTCCGTTGTCACCAAATAGTGGTTTGATTGGTTGGGTTCCTAATTGTGATACTCTCCATCAGCTTATTCGTGAATATAGAGATGCAAGAAAGATGTTTGTGAATATGGAACATCGGTTGATGCTAGCATTTGCTCCGGATTATGACATT

Ace file of the UniGene biog3_v1.0_unigene4164

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1100	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	FKBP12-rapamycin complex-associated protein [Arabidopsis thaliana] sp\|Q9FR53.1\|TOR_ARATH RecName: Full=Serine/threonine-protein kinase TOR; AltName: Full=Protein TARGET OF RAPAMYCIN; Short=AtTOR gb\|AAG43423.1\|AF178967_1 pTOR [Arabidopsis thaliana] gb\|AEE3	-	-	75%
FL-Next	sp=Serine/threonine-protein kinase TOR; Oryza sativa subsp. japonica (Rice).	-	-	84%
Blast2go	serine threonine-protein kinase tor-like isoform 2	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	84%
Blast2go	Lipopolysaccharide biosynthesis	00540	84%
Blast2go	Nicotinate and nicotinamide metabolism	00760	84%
Blast2go	Metabolic pathways	01100	84%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	84%
Blast2go	kinase activity	GO:0016301	Molecular Function	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%
Blast2go	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	84%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Ribosomal protein L23/L25, conserved site	IPR001014	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	PIK-related kinase, FATC	IPR003152	-	-
Sma3	FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding	IPR009076	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	PIK-related kinase	IPR014009	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0DJS1

Fln msg: Distance to subject end: 293 aas, your sequence is shorter than subject: 101 - 2465

Fln protein: MYGDSYAFLLKGHEDLRQDERVMQLFGLVNTLLANAPQTAEKDLSIERYSVIPLSPNSGLIGWVPNCDTLHQLIREYRDARKMFVNMEHRLMLAFAPDYDI

Protein Length: 102

Fln nts: AATGTATGGTGACAGTTATGCTTTTCTGCTCAAGGGTCACGAAGATCTGCGACAAGATGAGCGTGTCATGCAGCTGTTTGGTCTAGTGAACACTTTGTTGGCAAATGCACCACAAACTGCAGAGAAAGATCTCTCTATTGAACGATATTCTGTGATTCCGTTGTCACCAAATAGTGGTTTGATTGGTTGGGTTCCTAATTGTGATACTCTCCATCAGCTTATTCGTGAATATAGAGATGCAAGAAAGATGTTTGTGAATATGGAACATCGGTTGATGCTAGCATTTGCTCCGGATTATGACATT

Fln Alignment:

Contig4164___GDSYAFLLKGHEDLRQDERVMQLFGLVNTLLANAPQTAEKDLSIERYSVIPLSPNSGLIGWVPNCDTLHQLIREYRDARKMFVNMEHRLMLAFAPDYD
Q0DJS1_________________GNDYAFLLKGHEDLRQDERVMQLFGLVNTLLENSRKTSEKDLSIQRYAVIPLSPNSGLIGWVPNCDTLHALIREYRDARKIFLNQEHRCMLSFAPDYD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain